Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31346g00001 ATTACTGGGCCCAACCCAACGGCCCAGGCCCAAACTCAGGCCCAAAAAGAGATCCGTTTCAGAGGCGTTAGAAAACGTCCATGGGGTCGTTACGCCGCCGAGATCCGTGACCCAGGTAAAAAGACACGTGTCTGGCTAGGAACGTTTGACACGGCAGAAGAAGCGGCGCGTGCTTACGACACAGCGGCACGTGAGTTTCGTGGTTCAAAAGCAAAAACAAATTTTCCAACACCGATGGAGATTATTAATAACCGTAGCCCAAGTCAGAGTAGTACCCTTGAATCACCTTCACCACCGCCGCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAGCTGAAACAAAGCTTAGCGTCGTTGGTAGACGTGAGATGTGTGGATTTGATCTTCCTGTGACGGATTTTCGACGCGCCGCCGTTCAGAGTAGTGACTCTGGTTCATCTTCTTCTGTTGTTGATTATGAACGTGTGCCACGTCAGAGACACTTGGATCTTGATCTTAATGTTCCACCTCCACCTGAAGTTGCTTGA 606 0.4125 ITGPNPTAQAQTQAQKEIRFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPTPMEIINNRSPSQSSTLESPSPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETKLSVVGRREMCGFDLPVTDFRRAAVQSSDSGSSSSVVDYERVPRQRHLDLDLNVPPPPEVA 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31346g00001 201 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Trme31346g00001 201 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Trme31346g00001 201 MobiDBLite consensus disorder prediction 72 109 - -
Trme31346g00001 201 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Trme31346g00001 201 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Trme31346g00001 201 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Trme31346g00001 201 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Trme31346g00001 201 MobiDBLite consensus disorder prediction 163 201 - -
Trme31346g00001 201 CDD AP2 19 76 IPR001471 GO:0003700|GO:0006355
Trme31346g00001 201 MobiDBLite consensus disorder prediction 76 97 - -
Trme31346g00001 201 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 177 - -
Trme31346g00001 201 MobiDBLite consensus disorder prediction 163 179 - -
Trme31346g00001 201 Coils Coil 138 141 - -
Trme31346g00001 201 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Trme31346g00001 201 FunFam Ethylene-responsive transcription factor 2 19 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31346g00001 Trme-Chr31346 3 608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31346g00001 4 99 AP2-EREBP Transcription Factor Family AT3G15210 73.077 1.94e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme31346g00001 AP2 8.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme31346g00001 K09286 - qsa:O6P43_029132 155.221