Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme313194g00001 ATGGTTGGGATGGGTCAGAAGGATGCTTATGTGGGTGATGAAGCTCAGTCAAAGAGGGGTATCCTCACATTGAAGTATCCTATTGAGCATGGTATTGTTAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTTTACAATGAGCTTCGTGTTGCTCCCGAAGAACACCCCGTGCTTCTTACTGAAGCACCACTCAATCCCAAGGCCAATAGAGAAAAGATGACCCAAATTATGTTTGAAACCTTTAATGTGCCTGCAATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG 319 0.4389 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTT 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme313194g00001 106 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Trme313194g00001 106 CDD NBD_sugar-kinase_HSP70_actin 31 105 - -
Trme313194g00001 106 PANTHER ACTIN 8 106 IPR004000 -
Trme313194g00001 106 Gene3D - 1 106 - -
Trme313194g00001 106 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Trme313194g00001 106 SUPERFAMILY Actin-like ATPase domain 1 106 IPR043129 -
Trme313194g00001 106 Pfam Actin 7 106 IPR004000 -
Trme313194g00001 106 PRINTS Actin signature 72 85 IPR004000 -
Trme313194g00001 106 PRINTS Actin signature 6 17 IPR004000 -
Trme313194g00001 106 PRINTS Actin signature 97 106 IPR004000 -
Trme313194g00001 106 PRINTS Actin signature 18 40 IPR004000 -
Trme313194g00001 106 FunFam Actin, alpha skeletal muscle 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme313194g00001 Trme-Chr313194 13 331 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme313194g00001 1 106 Cytoskeleton Gene Families AT5G09810 100.000 9.71e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme313194g00001 K10355 - aew:130781020 219.935