Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme312540g00001 ATGAAAGCCAAGGTTTCAGATTTCGGACTTTCCAAACTTGCTGTTGATGGAGTCTCCCATGTTTCAAGCATAGTTCGCGGGACAGTAGGATACCTGGATCCTGAGTACTATATTTCCCAACAGCTAACTGACAAGAGTGATGTTTATAGCTTTGGCGTAATT 162 0.4259 MKAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVI 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme312540g00001 54 ProSiteProfiles Protein kinase domain profile. 1 54 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme312540g00001 54 SUPERFAMILY Protein kinase-like (PK-like) 2 54 IPR011009 -
Trme312540g00001 54 Gene3D Transferase(Phosphotransferase) domain 1 1 54 - -
Trme312540g00001 54 Pfam Protein tyrosine and serine/threonine kinase 2 54 IPR001245 GO:0004672|GO:0006468
Trme312540g00001 54 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 54 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme312540g00001 Trme-Chr312540 1 303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme312540g00001 1 54 Receptor kinase-like Gene Family AT1G67720 72.222 2.21e-23 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trme312540g00001 PK_Tyr_Ser-Thr 4.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme312540g00001 - - csv:101212456 108.612