Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31219g00001 ATCCAAGGAAAAATGCGGGATTACCAACTTGCGGGGCTAAATTGGCTCATACGTTTGTATGAAAATGGAATAAATGGAATTTTAGCAGATGAAATGGGTCTTGGCAAAACTTTACAAACTATATCTTTGTTGGGCTATTTACATGAGTTCAGAGGAATAACGGGTCCGCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTCTGTCCTGTTTTAAGGGCAATTAAGTTCCTTGGTAGCCCTGATGAAAGGGTAAGCCTAGCATTTCTAGAGTGA 300 0.4033 IQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGSPDERVSLAFLE 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31219g00001 99 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 17 99 IPR014001 -
Trme31219g00001 99 Gene3D - 1 99 IPR038718 -
Trme31219g00001 99 Pfam SNF2-related domain 9 92 IPR000330 GO:0005524|GO:0140658
Trme31219g00001 99 PANTHER SNF2/RAD54 HELICASE FAMILY 2 95 - -
Trme31219g00001 99 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 92 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31219g00001 Trme-Chr31219 407 846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31219g00001 8 76 RAD5 or RAD16-like Gene Family AT1G05120 40.541 2.24e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme31219g00001 SNF2_N 2.6e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme31219g00001 K11654 - csin:114308054 191.43