Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme311818g00001 ATGGTGAAAACAAATGTGGAGAAACCTGCGACGGAACGAAGTGATGCTTCATTGTTCCGAGGAGTGAGGAAGAGAAAATGGGGAAAATATGTGTCGGAAATTCGGCTGCCAAACAGCCGCCAGAGAATTTGGTTAGGTTCTTATGATTCTGCCGAGAAGGCGGCGCGTGCTTTTGACGCGGCGATGTTTTGCTTACGTGGCAGTGGTGCTAAATTTAATTTCCCCGGTGATCCGCCAAATATTGCCGGAGGAAGGTCCATGACACCTTCTCAGATTCAAGAAGCTGCAGCCCGTTTTGCTAATTCGGATATCCATAATGAGAAACCGGGTCGACCCGAT 339 0.4867 MVKTNVEKPATERSDASLFRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGAKFNFPGDPPNIAGGRSMTPSQIQEAAARFANSDIHNEKPGRPD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme311818g00001 113 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 102 - -
Trme311818g00001 113 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Trme311818g00001 113 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Trme311818g00001 113 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Trme311818g00001 113 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Trme311818g00001 113 Pfam AP2 domain 19 67 IPR001471 GO:0003700|GO:0006355
Trme311818g00001 113 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Trme311818g00001 113 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trme311818g00001 113 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Trme311818g00001 113 FunFam Ethylene-responsive transcription factor 2 17 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme311818g00001 Trme-Chr311818 2 340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme311818g00001 17 102 AP2-EREBP Transcription Factor Family AT1G19210 75.581 1.18e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme311818g00001 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme311818g00001 - - mtr:11441685 187.193