Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3116g00001 ATGGCGAGTAATCAGATATCTGGAAGAATACCCGAAAGAGTTGGGCAACTAATAGGTCTAACAGGTTTAAATATGAAGGAGAATTTTTTTGAGGGAACAATTCCTGATTCAATTGGAATGTTGAAGAATATTGTAGTATTGGTTTTGCAAGAAAACAAATTATTTGGTAACATCCCTGTTGTCATAGGCAATCTTACTGTGTTATCTGAACTATATTTGCATACCAATAAATTTGAAGGAAGCATTCCATTTACCCTTAGATATTGCACGAAGTTGCAATCTATTGGTGTTTCTGACAACAACTTGAGTGGTAATATACCTAATCAAACATTTGGCTATATAGAAGGTTTAATAAATCTTGACTTGTCCAACAACTCCTTGACTGGTTCCATTCCTTCAGATTTAGGTAACTTGAAGCATCTTTCCGTATTGTATCTATATGCAAACAAGTTGTCTGGTGAAATTCCCAATGAACTAAATGCTTGTTTGACACTAATAGAGCTTTTGTTGCAGAAAAACTTTTTCAATGGAAGTATACCTTCCTTCTTGGGGTCCTCACTAAGATCCCTCCAAATCTTAGACCTTTCTAACAATAACTTCTCAAGCACAATCCCTCCTGAACTAAAAGATTTGACATCATTGAGTATATTGAACTTGTCTTTTAACCATCTTTGTGGTGAAGTTCCAATTGGAGGGATCTTTAACAACATCACAATAATTTCACTCATTGGAAAAGGAAGCTCTGGAACTGTTTACAAAGGATCTCTTCTCAGCTTTGAAAGACTTATTGCTGTAAAAGTGTTTAATCTTGAAACACAAGGAGCAACAAAGAGTTTCATGGTGGAATGCAATGTTTTAGGAAAGATTAAGCACCGGAATCTTGTCAAGATCCTAACTTGTTGTTCATGTGTTGATTTAAATGGTAAAGATTTTAAGGCTATTGTTTTTGATTTCATGCCTAATGGGAGTCTAGAAAACTTGTTGCATGATAATGAAGGGGCTAAAAATCATAATCTCAGCCTCTTACAAATCGTAGACATTACTCTTGATGTAGCGCATGCGTTGGATTATCTTCACAATGATACAGAGCAAGTTGTAGTTCATTGTGATGTTAAGCCAAGCAACGTTCTTCTTGACAATGACATGGTAGGCCACTTGGGAGACTTTGGCTTAGCTAGGCTCATTCATAGAGCCGCCGAATATTCAAGTAAAGATGAAGTTAATTCCTTCACGGTTAAGGGAACTGTAGGATATGTTCCTCCTGAGTATGGAGCAGGTGGCTTGGTATCACCACAAGGAGATATTTACAGTTATGGGATTCTTCTGTTGGAGATGCTCACCGGAAAGAGACCAACAAATAGCATATTTTATGAGAATCTAAGTCTACACAACTTTTGTAAGATGAAAATTCCAAACGAGATACTCGAGATAGTGGATTCACGTTTGCTTATGCCATTTTCTAAAGATCAAACATGGGTTGTGGAAAACAACATAAATGAGTGTTTAGTGATGTTTGCAAAAATAGGGGTTTCATGTTCTGAACAATCTCCTACTCAGCGAATGTCCACAAAAGATGTTATAAAGAAGTTGCATGAAATTAAACAGAAGTTGTACTAG 1617 0.363 MASNQISGRIPERVGQLIGLTGLNMKENFFEGTIPDSIGMLKNIVVLVLQENKLFGNIPVVIGNLTVLSELYLHTNKFEGSIPFTLRYCTKLQSIGVSDNNLSGNIPNQTFGYIEGLINLDLSNNSLTGSIPSDLGNLKHLSVLYLYANKLSGEIPNELNACLTLIELLLQKNFFNGSIPSFLGSSLRSLQILDLSNNNFSSTIPPELKDLTSLSILNLSFNHLCGEVPIGGIFNNITIISLIGKGSSGTVYKGSLLSFERLIAVKVFNLETQGATKSFMVECNVLGKIKHRNLVKILTCCSCVDLNGKDFKAIVFDFMPNGSLENLLHDNEGAKNHNLSLLQIVDITLDVAHALDYLHNDTEQVVVHCDVKPSNVLLDNDMVGHLGDFGLARLIHRAAEYSSKDEVNSFTVKGTVGYVPPEYGAGGLVSPQGDIYSYGILLLEMLTGKRPTNSIFYENLSLHNFCKMKIPNEILEIVDSRLLMPFSKDQTWVVENNINECLVMFAKIGVSCSEQSPTQRMSTKDVIKKLHEIKQKLY 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3116g00001 538 ProSiteProfiles Protein kinase domain profile. 237 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3116g00001 538 ProSiteProfiles Leucine-rich repeat profile. 189 212 IPR001611 GO:0005515
Trme3116g00001 538 Gene3D Ribonuclease Inhibitor 1 245 IPR032675 -
Trme3116g00001 538 Gene3D Phosphorylase Kinase; domain 1 246 319 - -
Trme3116g00001 538 Pfam Leucine rich repeat 91 151 IPR001611 GO:0005515
Trme3116g00001 538 ProSitePatterns Protein kinases ATP-binding region signature. 243 266 IPR017441 GO:0005524
Trme3116g00001 538 Pfam Protein kinase domain 239 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3116g00001 538 SMART serkin_6 237 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3116g00001 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 366 378 IPR008271 GO:0004672|GO:0006468
Trme3116g00001 538 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 241 535 - -
Trme3116g00001 538 SUPERFAMILY L domain-like 2 244 - -
Trme3116g00001 538 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 134 228 - -
Trme3116g00001 538 SMART LRR_typ_2 138 162 IPR003591 -
Trme3116g00001 538 SMART LRR_typ_2 187 210 IPR003591 -
Trme3116g00001 538 SMART LRR_typ_2 211 236 IPR003591 -
Trme3116g00001 538 PRINTS Leucine-rich repeat signature 211 224 - -
Trme3116g00001 538 PRINTS Leucine-rich repeat signature 117 130 - -
Trme3116g00001 538 Gene3D Transferase(Phosphotransferase) domain 1 320 537 - -
Trme3116g00001 538 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 83 - -
Trme3116g00001 538 SUPERFAMILY Protein kinase-like (PK-like) 229 530 IPR011009 -
Trme3116g00001 538 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 319 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3116g00001 Trme-Chr3116 384 2413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3116g00001 4 538 Receptor kinase-like Gene Family AT3G47580 35.921 1.80e-110 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme3116g00001 Pkinase 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3116g00001 - - mtr:11438431 677.937