Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31168g00001 ATGGCTGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACCGGAATGGTGAAGGCGGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCAAGTATTGTTGGGCGACCACGTCATACCGGTGTTATGGTTGGGATGGGTCAAAAGGATGCCTATGTTGGTGATGAAGCCCAATCAAAAAGAGGTATTCTTACTCTCAAGTACCCCATTGAGCATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTACAATGAATTGCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTAACTGAGGCTCCACTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTCGAGACCTTTAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTCTATGC 437 0.4783 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31168g00001 146 FunFam Actin, alpha skeletal muscle 3 145 - -
Trme31168g00001 146 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Trme31168g00001 146 Gene3D - 4 146 - -
Trme31168g00001 146 PRINTS Actin signature 28 37 IPR004000 -
Trme31168g00001 146 PRINTS Actin signature 142 146 IPR004000 -
Trme31168g00001 146 PRINTS Actin signature 117 130 IPR004000 -
Trme31168g00001 146 PRINTS Actin signature 51 62 IPR004000 -
Trme31168g00001 146 PRINTS Actin signature 63 85 IPR004000 -
Trme31168g00001 146 PANTHER ACTIN 9 146 IPR004000 -
Trme31168g00001 146 SMART actin_3 7 146 IPR004000 -
Trme31168g00001 146 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Trme31168g00001 146 Gene3D Actin; Chain A, domain 2 36 73 - -
Trme31168g00001 146 SUPERFAMILY Actin-like ATPase domain 5 146 IPR043129 -
Trme31168g00001 146 CDD NBD_sugar-kinase_HSP70_actin 10 146 - -
Trme31168g00001 146 FunFam Actin, alpha skeletal muscle 36 73 - -
Trme31168g00001 146 Pfam Actin 5 146 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31168g00001 Trme-Chr31168 632 1159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31168g00001 1 146 Cytoskeleton Gene Families AT5G09810 99.315 1.88e-107 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme31168g00001 K10355 - mof:131146238 302.367