Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31157g00001 ATGATGACAGTAGAAGAGAGAAAGGAGTTAATGTTTTTCAATGATGAGACAAATTTTCAAATGGGAGAACTTCTTAGAGCTTCTGCTGAAGCATTAGGACATGGAATTATGGGGAATAGTTATAAGGCTATGTTGAATAATGGACATAATATTGTTGTGAAGAGGTTAAGGGACTTGAAACCATTTACTAAGGAAGAATTTGCAAAGATAGTGAAAATTATTGCTGATCTTAAACATCCTAATTTGTTGCCTTTGCTTGCTTATTACCATTCAAGAGATGAGAAGNNNATGCTCTATAGATATGCTCAGAATGGAAATCTTTTCTCTAGACTTCATG 337 0.3353 MMTVEERKELMFFNDETNFQMGELLRASAEALGHGIMGNSYKAMLNNGHNIVVKRLRDLKPFTKEEFAKIVKIIADLKHPNLLPLLAYYHSRDEKXMLYRYAQNGNLFSRLH 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31157g00001 112 SUPERFAMILY Protein kinase-like (PK-like) 30 112 IPR011009 -
Trme31157g00001 112 Gene3D Phosphorylase Kinase; domain 1 2 101 - -
Trme31157g00001 112 Pfam Protein tyrosine and serine/threonine kinase 30 112 IPR001245 GO:0004672|GO:0006468
Trme31157g00001 112 ProSiteProfiles Protein kinase domain profile. 26 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme31157g00001 112 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 112 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31157g00001 Trme-Chr31157 520 856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31157g00001 3 112 Receptor kinase-like Gene Family AT2G36570 44.144 1.12e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme31157g00001 PK_Tyr_Ser-Thr 2.6e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme31157g00001 - - tpra:123904544 225.713