Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3113g00001 ATGGTGCCCGAAGTATTTAGTAGAGCATTTGGTGGAGTTTCTCACAAGTCAGATGTATACAGTTATGGCATGTTGATTCTTGAAATGATTGGAGGAAGAAAGAACTATGACACCGGAGGATCATGTTCGTCGGAAAAGTACTTTTCAGACTGGATTTACAAGAATCTTGAGCAAGGTAATACTCGTCTAAATTGTTTGACAATCTCAGAGGAAGAAAATGATATGGTTAGAAAGATTACATTGGTGAGTCTATGGTGCATTCAAACGAATCCATCAGACAGACCACCGATGAATAAAGTAATAGAAATGCTACTAGGGCCACTTTCATCAGTGTCACATCCTCCAAAGCCTGTCTTATTTTCTCCCGAAAGGAAACCACTACAAGTTTCAGATATGTCTTCATCCAATTTGTACGAGACAAATTCAATTACAGTATCAAAATAA 444 0.3784 MVPEVFSRAFGGVSHKSDVYSYGMLILEMIGGRKNYDTGGSCSSEKYFSDWIYKNLEQGNTRLNCLTISEEENDMVRKITLVSLWCIQTNPSDRPPMNKVIEMLLGPLSSVSHPPKPVLFSPERKPLQVSDMSSSNLYETNSITVSK 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3113g00001 147 SUPERFAMILY Protein kinase-like (PK-like) 1 138 IPR011009 -
Trme3113g00001 147 ProSiteProfiles Protein kinase domain profile. 1 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3113g00001 147 Gene3D Transferase(Phosphotransferase) domain 1 1 113 - -
Trme3113g00001 147 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 126 IPR045874 GO:0004672
Trme3113g00001 147 Pfam Protein tyrosine and serine/threonine kinase 1 104 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3113g00001 Trme-Chr3113 1586 2029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3113g00001 1 135 Receptor kinase-like Gene Family AT5G38280 51.773 1.03e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme3113g00001 PK_Tyr_Ser-Thr 1.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3113g00001 - - psat:127126843 253.447