Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31115g00001 ATGCCAGCAACGGGTTTAACCATCGCGGTTAAAAAGTTTCGTACGTCAGAGAAATTCTCAGCGTCGTCATTTTCATCAGAGATTGCCACGCTAGCAAGAATCAGACACCGAAATATTGTTCGGTTATTGGGTTGGGGTGCGAACCGGAGGACAAAGTTACTGTTTTATGATTTTTTACCGAACGGTAATTTGGATGCGATGTTACACGAGGGGTGTACGGGATTAGCCGTTGAATGGGAGACCCGACTTAAGATAGCATTGGGTGTTGCCGAGGGTTTAGCTTATTTGCACCATGATTGTGTTCCTGCTATCTTGCACCGGGATGTTAAGGCGCAAAANATTTTGTTAGGAGATAGATATGAAGCGTGTTTGGCTGATTTTGGATTCGCTCGTTTTGTTGAAGAACCTCGCTCTTCGTTTTCCGTTAATCCTCAATTCGCGGGTTCTTACGGCTACATTGCTCCCGATAAGATAAGCAACAACGATTATAAAGTTAATTAG 501 0.4371 MPATGLTIAVKKFRTSEKFSASSFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDFLPNGNLDAMLHEGCTGLAVEWETRLKIALGVAEGLAYLHHDCVPAILHRDVKAQXILLGDRYEACLADFGFARFVEEPRSSFSVNPQFAGSYGYIAPDKISNNDYKVN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31115g00001 166 Pfam Protein kinase domain 4 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme31115g00001 166 ProSiteProfiles Protein kinase domain profile. 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme31115g00001 166 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 160 - -
Trme31115g00001 166 Gene3D Transferase(Phosphotransferase) domain 1 2 166 - -
Trme31115g00001 166 SUPERFAMILY Protein kinase-like (PK-like) 4 161 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31115g00001 Trme-Chr31115 18 633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31115g00001 4 159 Receptor kinase-like Gene Family AT5G56040 53.988 1.18e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme31115g00001 Pkinase 2.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme31115g00001 - - adu:107493731 274.248