Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31054g00001 ATGGATCCTCAAGGTCATGGCCAAAACCCATCTATGGGAGTTGTTGGCGGTGGACAAATGGCCACATATGGTTCTAATCCGTACCAGCCCAACCATTTAACTGGGTCACCTGGGATGGTTGTTCCCAATGTGGGGAATATTCAACCCGGTGGTCAACCAGATGGAACTCAGCTCGGACAACACCAACTTGCTTATCAGCATATTCATCAGCAGCAACAACAACAGCAGCAGCAACAGCTCCAGGCCTTTTGGGGAAATCAGTATCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCTTAGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTGAAGATGATATCAGCTGAGGCGCCGGTTGTGTTTGCTAGGGCGTGCGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAGAATGATATTGCAGCGGCCATCACAGGAACTGATATCTTTGATTTCTTGGTCGACATTGTTCCTCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGACCAATGCCTGTTGGAGGACCTGCTGATGGAATTCCTTACTGCTATATGCCGCCTCAAAATGCACAGCAAGCTGGAAATCCTGGTCTCATGATGCATAATCCAAACATGTATGCTCCGCAGTCTCATCCATACATGGCACCTCAAATGTGGCCCCAACCGTCAGAGCAACAACCATCGCCTTCAGATCAGTAG 771 0.4695 MDPQGHGQNPSMGVVGGGQMATYGSNPYQPNHLTGSPGMVVPNVGNIQPGGQPDGTQLGQHQLAYQHIHQQQQQQQQQQLQAFWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPREDLKDEVLASIPRGPMPVGGPADGIPYCYMPPQNAQQAGNPGLMMHNPNMYAPQSHPYMAPQMWPQPSEQQPSPSDQ 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31054g00001 256 Pfam Core histone H2A/H2B/H3/H4 67 164 IPR007125 GO:0003677
Trme31054g00001 256 MobiDBLite consensus disorder prediction 233 256 - -
Trme31054g00001 256 SUPERFAMILY Histone-fold 67 173 IPR009072 GO:0046982
Trme31054g00001 256 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 67 212 - -
Trme31054g00001 256 MobiDBLite consensus disorder prediction 1 25 - -
Trme31054g00001 256 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Trme31054g00001 256 FunFam Nuclear transcription factor Y subunit gamma 67 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31054g00001 Trme-Chr31054 362 1132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31054g00001 1 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.525 1.28e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trme31054g00001 Histone 3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme31054g00001 K08066 - gmx:100527803 359.762