Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3104g00001 ATGGCTAAGGTGTGTAGCCATGTTTTATTGTTTCAGAGACCCTCATATCGACCATTGAGAAACCGGATTAGCAACAGTGTTAGCCGGGATGGTGCTGTATCTTCTAAACGCAAAAGAGCTGTGGATACTAAATCAGCACCTCGACGTGAAGGTCTACGGCCTCGTCGATCGAAGGCTGCTGGTAGAGACAGATTAATTTCAGAATCAGATGATGATCAAGACCTTTCAGAGGAGAAAGTTGAACAAGATGAAACAGAAAATGGAAATGATGTTGAAGAAAATGATGCAGAAGATGGCCATAATGAGATGGAGGGGGATGCCGAGGGTGAAGATGAAGGTGAGGATGAAGGTGACGAGGATGGCGATGATGATGAAGATGGTGAAGAAGAACAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTGCAGATGTCCGCAGGTTCTCTATGGAGGAAGGGAAGGCACGGCCAAGGTCTCCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAACAGGGATGTAAGGAAGGGTGGATCAAGAGTTCACAAGCGCCATCGCTTAACAAGGCCGGAAGATTCTGATGACTCCCTTCTTGTGGATGAGTTGGACCAAGGCCCTGCTATTCCATGGGGTCGAGGTGGAAGCAGATCTGGCCCACCGTTTCTTTTTGGGGGTGTAGACACACATGGAACAACAGCTTGGGGATTAAACCTTGCTGCATCGGGTTGGGGTCATCAGGGTGATGCTTTTGCTACACTGACTTCAGGGATTCAAACTGCTGGTCCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTGCAGATTGATGATAGTGTAAGTTTTGATGATATAGGTGGGCTCTCTGAATACATCGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTATTGTTATGTGGGCCCCCTGGCACAGGGAAAACATTGATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGTCAGAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCCGAAAGACAACTGAAACTTCTATTTGAGGAAGCACAAAGGAATCAACCTTCTATTATTTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGATCTAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGCCTTGATTCTCGTGGACAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTGCGACGTCCTGGCAGATTTGATCGTGAATTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTGCTGAAATATTAGACATTCATACTCGCAAGTGGCAGCATCCTCCTCCAGAGGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTATTGTGGTGCTGACCTAAAGGCTCTCTGTACTGAAGCGGCCATTCGTGCTTTCCGTGAAAAATATCCACAGGTTTATACAAGTGATGACAAATTTCTAATTGATGTTAATTCTATCAGGGTAGAAAAGTGTCATTTTATTGAAGCAATGTCTACAATTACTCCTGCTGCTCATAGAGGAGCTATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATCTGGAGAAAGCCATGAGTACTATATCTGATATTTTCCCTCCAGTATCTGTTGCATCAGAATTGACCAAACTTTCAATGCTTTCGTATGGGTCTGCAATTCCGCTTGTATATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGCACTGGGCTGGATCATCTTGGGCCTGCGGTTTTACACGAACTGGAAAAATTTCCTGTACATTCATTAGGACTTCCATCTCTTCTGTCAGATCCTGGTGCAAAAACACCGGAGGAGGCGTTGGTACATATATTTGGCGAAGCTAGAAGAACAACACCATCAATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCTGTTCTCCTGACGATGCTAGAAGAATTGCCATCTGACTTGCCTATCTTACTTCTTGGTACATCCTCAGCTGCACTTGCTGATGTTGAGGAAGTGCCTACTTCAGTTTTCCCTCATCGCTCAGTGTACGATTAA 2205 0.4494 MAKVCSHVLLFQRPSYRPLRNRISNSVSRDGAVSSKRKRAVDTKSAPRREGLRPRRSKAAGRDRLISESDDDQDLSEEKVEQDETENGNDVEENDAEDGHNEMEGDAEGEDEGEDEGDEDGDDDEDGEEEQDGRRRYDLRNRADVRRFSMEEGKARPRSPRRVLHQGMGTKVNRDVRKGGSRVHKRHRLTRPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPFLFGGVDTHGTTAWGLNLAASGWGHQGDAFATLTSGIQTAGPSSKGGADIQPLQIDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWQHPPPEELKKELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVNSIRVEKCHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSTISDIFPPVSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPGAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTMLEELPSDLPILLLGTSSAALADVEEVPTSVFPHRSVYD 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3104g00001 734 ProSitePatterns AAA-protein family signature. 426 444 IPR003960 GO:0005524|GO:0016887
Trme3104g00001 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 713 IPR027417 -
Trme3104g00001 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 544 IPR027417 -
Trme3104g00001 734 Pfam AAA+ lid domain 483 520 IPR041569 -
Trme3104g00001 734 Pfam ATPase family associated with various cellular activities (AAA) 321 456 IPR003959 GO:0005524|GO:0016887
Trme3104g00001 734 SMART AAA_5 317 458 IPR003593 GO:0016887
Trme3104g00001 734 MobiDBLite consensus disorder prediction 70 129 - -
Trme3104g00001 734 MobiDBLite consensus disorder prediction 32 69 - -
Trme3104g00001 734 Gene3D - 457 542 - -
Trme3104g00001 734 PANTHER AAA DOMAIN-CONTAINING 28 730 IPR045199 -
Trme3104g00001 734 MobiDBLite consensus disorder prediction 22 201 - -
Trme3104g00001 734 FunFam ATPase family AAA domain-containing protein 2B 457 542 - -
Trme3104g00001 734 MobiDBLite consensus disorder prediction 130 159 - -
Trme3104g00001 734 FunFam ATPase family, AAA domain-containing 2 279 462 - -
Trme3104g00001 734 Gene3D - 279 549 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3104g00001 Trme-Chr3104 34 2451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3104g00001 267 521 Calmodulin-binding Proteins AT3G56690 36.293 1.99e-41 161