Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3103g00001 GAAAAGGCAGCAATTGCTGCAAAGGCAAACGATGAAGCTTATACTCCCGACCCATATGCAGTCACCGGAAACATGAGTTATGCTGTTAGCGAAATGATAATTGGCGGCAATAAAGGAAGAAGGAATCTGGGGACCCTTAAACATGGTCCATGCAAGGCTACAAACCCCATTGACAGGTGTTGGAGGTGTGATCGTAACTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGGAAGACTACTGGTGGAAAAGCAGGTCCTATCTATGTGGTAACTAGTCCCTTAGATAATGACATGGTGAATCCACGTCCAGGTACCCTTAGGCACGCAGTTACAAGAAATGGACCATTGTGGATCATCTTCGCTCGTAGCATGAACATTAGGCTCAGCCAGGAACTCATAATGACAAGTGACAAGACCATTGATGGACGAGGAGCTGATATTGTCATTGCAAATGGTGCTGGTATTACTATCCAGTTCATTAGGAATGTGATCATCCATGGGATCAAAGTTTTTGACATTAATATTGGCACTGGTGGACTTATTAGAGATGCTGAGAACCATTATGGTTACAGGACTATGAGTGATGGTGATGGAATTTCAATTTTTGCCTCCAGCAATGTTTGGATTGACCATGTTTCGATGAGAAACTGCAGAGATGGACTCATTGATGCCATTATGGGATCCACTGGAATTACCATCTCCAATAGCCATTTCACAGATCACAACGAGGTGATGCTGTTTGGTGCAAGTGATGGCTATGATGGTGATCAGAAAATGCAGATCACACTTGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGNTGCAGATGGGGTTTTATCCATGTACTTAACAATGACTACACACACTGGGAAATGTATGCCATTGGAGGTAGCAAACACCCTACCATTATAAGTGAGGGTAACCGATTCATTGCCCCTAACAATGGCTATGCTAAAGAGATAACAAAGAGGGAGTACACACCAGAGTCGGAGTGGAAAAGCTGGACATGGAGATCAATCAACGACGTGTACCTGAACGGAGCATTTTTCAGACAAGGTGGATCTGTGCTGACTAACAGACCATTCTCCAGGAAGGAAATGATCACAGCTAAACCTGGAACTTATGTGGGAAGGCTTACTCGTTATTCTGGAAGCCTTAGATGCATAGTGGGAAGGCCTTGTTAA 1215 0.4395 EKAAIAAKANDEAYTPDPYAVTGNMSYAVSEMIIGGNKGRRNLGTLKHGPCKATNPIDRCWRCDRNWANNRKKLADCVQGFGRKTTGGKAGPIYVVTSPLDNDMVNPRPGTLRHAVTRNGPLWIIFARSMNIRLSQELIMTSDKTIDGRGADIVIANGAGITIQFIRNVIIHGIKVFDINIGTGGLIRDAENHYGYRTMSDGDGISIFASSNVWIDHVSMRNCRDGLIDAIMGSTGITISNSHFTDHNEVMLFGASDGYDGDQKMQITLAFNHFGKRLIQRMPXCRWGFIHVLNNDYTHWEMYAIGGSKHPTIISEGNRFIAPNNGYAKEITKREYTPESEWKSWTWRSINDVYLNGAFFRQGGSVLTNRPFSRKEMITAKPGTYVGRLTRYSGSLRCIVGRPC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3103g00001 404 Gene3D - 54 397 IPR012334 -
Trme3103g00001 404 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Trme3103g00001 404 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Trme3103g00001 404 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Trme3103g00001 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Trme3103g00001 404 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Trme3103g00001 404 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Trme3103g00001 404 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Trme3103g00001 404 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Trme3103g00001 404 PANTHER PECTATE LYASE 18-RELATED 8 402 IPR045032 GO:0030570
Trme3103g00001 404 SUPERFAMILY Pectin lyase-like 55 394 IPR011050 -
Trme3103g00001 404 SMART amb_all 129 326 IPR002022 -
Trme3103g00001 404 Pfam Pectate lyase 139 320 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3103g00001 Trme-Chr3103 188 2201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3103g00001 1 404 Polysaccharide Lyase AT1G14420 61.905 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3103g00001 K01728 - gmx:100796307 698.353