Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30980g00001 ATGGACATTTCGACATATATATCGAGGTCAGCCGAAGAGACACCTTCTCACAACGGGATGGAGTTTATTTGTAGGCTCAAAAAGGCTTCGAGCAGGGATGAGAAATCGCAATTACGAGTTGGTGTCCGGCGTGCTAATCGTCAACAAACAACACTACCATCGGCATGTCCATCAGATTTTGTTATTCCACTGGCCAAATACAGAAAATCTGTTTATGGTACTCAGCTCTCGGTTGGCATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGG 274 0.4489 MDISTYISRSAEETPSHNGMEFICRLKKASSRDEKSQLRVGVRRANRQQTTLPSACPSDFVIPLAKYRKSVYGTQLSVGMRFGMMFETEES 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30980g00001 91 Pfam Auxin response factor 53 91 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trme30980g00001 91 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 53 91 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme30980g00001 91 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30980g00001 Trme-Chr30980 134 1124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30980g00001 32 91 B3 DNA Binding Superfamily AT1G19850 54.839 3.06e-25 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30980g00001 K14486 - cit:102620437 100.138