Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme309532g00001 GGAAAAGTTGTTCAAGTTTATCGTAAGAAATGGGTGATTCATATCGAACGTATAACACGTGAGAAGGTTAATGGTTCAACTGTTAATGTTGGTGTTAATCCTTCGAAATGTGTTATCACTAAGCTTCGTTTGGATAAGGATAGGAAATCTTTGCTTGATCGTAAGGCGAAGGGTCGTGCTGCTGCTGATAAGGAGAAGGGTACTAAGTTTGCTCCTGAAGACATTATGCAAAATGTTGATTAG 243 0.3868 GKVVQVYRKKWVIHIERITREKVNGSTVNVGVNPSKCVITKLRLDKDRKSLLDRKAKGRAAADKEKGTKFAPEDIMQNVD 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme309532g00001 80 CDD KOW_RPL26 1 39 IPR041988 GO:0003723
Trme309532g00001 80 MobiDBLite consensus disorder prediction 55 71 - -
Trme309532g00001 80 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 13 55 IPR005756 GO:0003735|GO:0006412|GO:0015934
Trme309532g00001 80 NCBIfam 50S ribosomal protein L24 1 56 IPR005756 GO:0003735|GO:0006412|GO:0015934
Trme309532g00001 80 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 75 IPR005756 GO:0003735|GO:0006412|GO:0015934
Trme309532g00001 80 MobiDBLite consensus disorder prediction 55 80 - -
Trme309532g00001 80 SUPERFAMILY Translation proteins SH3-like domain 1 59 IPR008991 -
Trme309532g00001 80 Gene3D - 1 78 IPR014722 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme309532g00001 1 80 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 88.750 1.73e-48 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme309532g00001 K02898 - psom:113287012 127.872