Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme3092g00001 | TACAATGCCATGGTTTTTGAAGCTCTATCTACATTAAAGGATGCTAATGGGTCCGACCTAAATGCCATTGCTAGTTTCATCGAGCAAAAGCATCAGGTTCCTCAAAATTTCAGAAGGACACTGAGTTCAAGGTTGAGGACCCTCGTGAATCAAGAGAAGCTTGAAAAGGTAAAGTAA | 177 | 0.4068 | YNAMVFEALSTLKDANGSDLNAIASFIEQKHQVPQNFRRTLSSRLRTLVNQEKLEKVK | 58 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme3092g00001 | 58 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 1 | 58 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Trme3092g00001 | 58 | SMART | h15plus2 | 1 | 58 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Trme3092g00001 | 58 | Pfam | linker histone H1 and H5 family | 1 | 58 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Trme3092g00001 | 58 | SUPERFAMILY | "Winged helix" DNA-binding domain | 1 | 58 | IPR036390 | - | |
| Trme3092g00001 | 58 | CDD | H15 | 1 | 58 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Trme3092g00001 | 58 | Gene3D | - | 1 | 58 | IPR036388 | - | |
| Trme3092g00001 | 58 | PANTHER | SINGLE MYB HISTONE 4 | 1 | 58 | IPR044597 | GO:0003691 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme3092g00001 | Trme-Chr3092 | 1315 | 1774 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme3092g00001 | 1 | 58 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 58.621 | 2.50e-20 | 79.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme3092g00001 | K09422 | - | csin:114276621 | 88.1965 |