Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30913g00001 ATTCTGTCGAAGAACAAGCTGAGTGGGTCGATACCTGCAGCAGTTGCAAAACTCACCAACCTGAAAACTGTGGACATTTCATTCAACAACCTTACTGGAAACCTTCCCAAGCAATTGGCCAACCTTCCCAATCTCCTGACCTTCAATTTATCTCACAACAACCTTGAGGGTGAACTCCCGGCTGGTGGTTTCTTCAACACCATTTCGCCTTCCTCTGTTTCTGGCAATCCATTTATTTGTGGCTCTGTTGTGAACAAAAAATGCCCTGTTAAACTCCCGAAGCCTATTGTTCTGAATCCCAACTTTTCTTCTCCTGACCTTGACCCTGGTTCGCCTACTCCAACTTTAGGTCACAAAAGAAATATCCTCAGCATTTCAGCACTCATTGCCATTGGTGCAGCTGCTTTCATTGTAATTGGTGTCATTGGAATAACTGTTCTCAACCTCCGTGTTCGGTCCACCGCATCTCGATCTCCAGCTGCCCTTGCTTTTTCTGCAGGGGATGAGTTCAGCCGTTCGCCAACAACAAATGCAAACTCCGGCAAGCTTGTCATGTTTTCAGGTGAGCCTGATTTCAGCTCTGGTGCTCACGCCTTGCTGAACAAGGATTGTGAGCTGGGGCGTGGAGGGTTTGGAGCTGTGTACCAAACAGTTCTTGGAGACGGGCGTTCCGTTGCTATAAAGAAGCTCACCGTGTCAAGCCTCGTCAAGTCTCAAGAAGATTTCGAGAGGGAAGTGAAAAAATTAGGAAAAGTCAGACACCAAAACCTCGTCGAACTCGAAGGATATTATTGGACTTCATCGCTGCAACTCCTCATATACGAGTTTGTCTCACGTGGTAGCCTTTACAAGCATCTCCACGAAGGATCAGG 872 0.4713 ILSKNKLSGSIPAAVAKLTNLKTVDISFNNLTGNLPKQLANLPNLLTFNLSHNNLEGELPAGGFFNTISPSSVSGNPFICGSVVNKKCPVKLPKPIVLNPNFSSPDLDPGSPTPTLGHKRNILSISALIAIGAAAFIVIGVIGITVLNLRVRSTASRSPAALAFSAGDEFSRSPTTNANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEFVSRGSLYKHLHEGSG 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30913g00001 291 Gene3D Phosphorylase Kinase; domain 1 193 276 - -
Trme30913g00001 291 Gene3D Ribonuclease Inhibitor 1 93 IPR032675 -
Trme30913g00001 291 SUPERFAMILY L domain-like 2 74 - -
Trme30913g00001 291 Pfam Protein tyrosine and serine/threonine kinase 202 288 IPR001245 GO:0004672|GO:0006468
Trme30913g00001 291 SUPERFAMILY Protein kinase-like (PK-like) 203 290 IPR011009 -
Trme30913g00001 291 ProSitePatterns Protein kinases ATP-binding region signature. 206 229 IPR017441 GO:0005524
Trme30913g00001 291 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 194 276 - -
Trme30913g00001 291 PANTHER OS05G0588300 PROTEIN 2 287 - -
Trme30913g00001 291 FunFam Leucine-rich repeat receptor-like protein kinase 1 90 - -
Trme30913g00001 291 ProSiteProfiles Protein kinase domain profile. 200 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30913g00001 Trme-Chr30913 292 1163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30913g00001 2 78 Receptor kinase-like Gene Family AT3G56370 39.744 8.75e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trme30913g00001 PK_Tyr_Ser-Thr 3.8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30913g00001 - - mtr:25489825 515.383