Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme308892g00001 AATCTTATTGGAAGAGGTGGTTTTGCTGAGGTTTACAAGGGTTCTCTTCAAGATGGACAACTAGTAGCTGTGAAGAAAATGACTACAGGGAGCACAGATGAGAAAACAGCTGGATTTCTATCTGAGTTAGGCATTATTGCTCATGTTGATCATCCTAATACTGCCAAGCTTGTTGGATGTTGTGTAGAGGGAGAAATGCACCTTGTCTTTGAACTCTCTACACTGGGAAGTTTAGGATCTGTTCTTCATGGTTAG 255 0.4118 NLIGRGGFAEVYKGSLQDGQLVAVKKMTTGSTDEKTAGFLSELGIIAHVDHPNTAKLVGCCVEGEMHLVFELSTLGSLGSVLHG 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme308892g00001 84 PANTHER OS08G0249100 PROTEIN 1 84 IPR046958 -
Trme308892g00001 84 ProSiteProfiles Protein kinase domain profile. 1 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme308892g00001 84 Gene3D Phosphorylase Kinase; domain 1 1 72 - -
Trme308892g00001 84 ProSitePatterns Protein kinases ATP-binding region signature. 3 26 IPR017441 GO:0005524
Trme308892g00001 84 Pfam Protein tyrosine and serine/threonine kinase 3 83 IPR001245 GO:0004672|GO:0006468
Trme308892g00001 84 SUPERFAMILY Protein kinase-like (PK-like) 1 83 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme308892g00001 Trme-Chr308892 68 322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme308892g00001 1 84 Receptor kinase-like Gene Family AT1G53420 49.412 1.10e-20 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme308892g00001 PK_Tyr_Ser-Thr 7.6e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme308892g00001 - - cam:101512181 159.844