Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3082g00001 GCCATAAAGTATATCGAGTACGATTCTGCCTTTGGTGATAAGGAGAAACAGCAGGCCAAAGCATTGAAANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAGGACTACAAACAGGCAGAGAAGTTGTGCACAAAGGTGTTAGAGCTTGATAGTAGGAATGTAAAAGCACTATACCGGAGGGCACAAGCATATATTAATCTTGTTGACTTGGATTTGGCTGAAATGGATATCAAGAAAGCCCTTGAAATTGATCCAGATAACAGGGATGTGAAGATTGAGTACAAAATTTTGAAAGACAAAGTGAGAGAATACAACAAGAAGGATGCACAATTCTATGGTAACATATTTGCCAAAATGAATAAAGTAGATCAATCAAGAACTGCAGCAGCAAATCAGGAATCTGTGCCGATGGCTGTGGATAGTAAAGCTTAA 444 0.3491 AIKYIEYDSAFGDKEKQQAKALKXXXXXXXXXXXXXXXDYKQAEKLCTKVLELDSRNVKALYRRAQAYINLVDLDLAEMDIKKALEIDPDNRDVKIEYKILKDKVREYNKKDAQFYGNIFAKMNKVDQSRTAAANQESVPMAVDSKA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3082g00001 147 Coils Coil 91 111 - -
Trme3082g00001 147 Coils Coil 16 23 - -
Trme3082g00001 147 Gene3D Tetratricopeptide repeat domain 1 118 IPR011990 GO:0005515
Trme3082g00001 147 SMART tpr_5 58 91 IPR019734 GO:0005515
Trme3082g00001 147 Pfam Tetratricopeptide repeat 58 91 IPR001440 GO:0005515
Trme3082g00001 147 ProSiteProfiles TPR repeat profile. 58 91 IPR019734 GO:0005515
Trme3082g00001 147 SUPERFAMILY TPR-like 38 124 IPR011990 GO:0005515
Trme3082g00001 147 Coils Coil 39 46 - -
Trme3082g00001 147 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 1 139 IPR039663 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3082g00001 Trme-Chr3082 55 752 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3082g00001 1 130 Calmodulin-binding Proteins AT3G25230 62.308 1.01e-49 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3082g00001 K09571 - gmx:100810243 217.624