Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme308234g00001 GAACGGATTCCGTTAGAGGAAGTGTTTCAACACCTGAAATGCTCGAGAGATGGTCTAACTTCCGAGGAAGGAGCCAACAGGCTCCAAGCATTTGGACCAAATAAGCTTGAGGAAATTAAGGATAGCAAGTTTCTGAAATTTTTGGGTTTTATGTGGAACCCTTTGTCATGGGTTATGGAGGTTGCTGCCATCATGGCGATTGCTCTGGCGAACGGTGGAGGAAAGCCTCCGGACTGGCAAGAT 243 0.4733 ERIPLEEVFQHLKCSRDGLTSEEGANRLQAFGPNKLEEIKDSKFLKFLGFMWNPLSWVMEVAAIMAIALANGGGKPPDWQD 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme308234g00001 81 SMART Cation_ATPase_N_a_2 1 71 IPR004014 -
Trme308234g00001 81 Pfam Cation transporter/ATPase, N-terminus 3 65 IPR004014 -
Trme308234g00001 81 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 80 IPR023298 -
Trme308234g00001 81 PANTHER CALCIUM-TRANSPORTING ATPASE 7 81 - -
Trme308234g00001 81 Gene3D - 50 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme308234g00001 Trme-Chr308234 1 243 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme308234g00001 1 81 Primary Pumps ATPases AT2G07560 80.247 6.55e-44 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme308234g00001 K01535 - gmx:100791692 154.836