Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30820g00001 GCACCTGAACTTCTTCTGGGGGCAAAACAGTACTCAACAGCTATTGATATGTGGTCTCTTGGTTGTATAATGGCTGAGCTATTGTCTAAGGAACCGCTGTTCAATGGAAAAACGGAATTTGATCAACTTGACAAGATTTTCAGGATACTTGGCACTCCAAATGAAACAATTTGGCCGGGCTTCTCAAAATTACCCGGAGTCAAGGTCAATTTTGTCAAGCACCAGTATAATCTTCTGCGTAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTAACTTATGACCCTGAAAAGAGGATCACGGCTGAAGCTGCTCTNAATCATGAATGGTTCCGTGAAGTTCCTCTTCCCAAGAGCAAAGAATTCATGCCTACATTTCCTGCCCAGCATGCTCAGGACAGATTCATGATGTTATCAGGAGGATGCGGAGAGTGTACAAGAGTCCAGACCCTTTAG 498 0.4297 APELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRFMMLSGGCGECTRVQTL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30820g00001 165 FunFam - 1 125 - -
Trme30820g00001 165 Pfam Protein kinase domain 1 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme30820g00001 165 PANTHER CELL DIVISION PROTEIN KINASE 1 131 - -
Trme30820g00001 165 SUPERFAMILY Protein kinase-like (PK-like) 1 131 IPR011009 -
Trme30820g00001 165 Gene3D Transferase(Phosphotransferase) domain 1 1 149 - -
Trme30820g00001 165 ProSiteProfiles Protein kinase domain profile. 1 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme30820g00001 165 SMART serkin_6 1 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30820g00001 Trme-Chr30820 69 1142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30820g00001 1 129 Core Cell Cycle Gene Families AT1G20930 48.837 4.32e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Trme30820g00001 Pkinase 4.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30820g00001 K08818 - gmx:100792524 306.605