Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3081g00001 ATGGTCAAATTTAATGACAGAAAGAATGGTAATTCATGGAGCTCTGGACCTGCACCCCCACCTCCTCCTGGTACACCTCCAATAAACAAAAACAACGGTAATCACAAGTCTGGTGAACATAAAACCTCGTCAGGTTCTGGTTCAAGTGACGGAAGCAAAAAATCCGGTATAGGAGGTGGTGCCATTGCTGGAATAGTGATCTCTATCTTAGTTGTTGGTGCAATAGTAGCATTCTTTCTGGTGAAGAAAAGATCCAAGAAGTCGTCTGGAGATGTGGAAAAGCTAGACAATCGACCCTTGGCTCCTCATACTTCAAATGAAGTGCATGACGAGTTTCCAAAGAAGCCCGCTGTTGTCAAGAAGACCGTAACACCTCCTGCAAATCTGAAATCATATTCTATAGCTGACCTACAGATTGCTACGGGAAGCTTCAGTGTGGATCAACTTCTTGGTGAGGGGTCTTTTGGACGTGTTCTTGCTGTGAAGAAGATAGATTCATCTGTCATTCCCAATAATTTGTCCGAAGATTTTATGGAGATAGTTTCTAATCTCTCCCGTTTGCATCATCCGAATGTGACGGAGCTTGTAGGTTATTGTTCAGAGCATGGACAACACCTCTTAGTCTATGAGTTCCACAAAAATGGATCACTGCATGAATTCCTTCACCTCCCTGATGAGTTCATTAAACCGTTGATATGGAATTCACGTGTCAAGATTGCTTTGGGAATTGCACGCGCTTTAGAGTACCTACATGAAGTTTGTTCGCCATCAGTTGTTCATAAGAATATAAAGGCAGCCAACATATTACTTGATACTGATCTTAATCCTCATCTATCAGACAGTGGATTGGCCAGCTATATACCAAATGCAAACCAGGTATTGAACAATAATGCTGGATCTGGATACGATGCTCCAGAAGTCGGGTTGTCTGGTCAGTATACTCTTAAGAGTGATGTCTATAGCTTTGGAGTTGTCATGTTGGAGCTTCTAAGTGGACGGAAACCATTTGATAG 1013 0.4235 MVKFNDRKNGNSWSSGPAPPPPPGTPPINKNNGNHKSGEHKTSSGSGSSDGSKKSGIGGGAIAGIVISILVVGAIVAFFLVKKRSKKSSGDVEKLDNRPLAPHTSNEVHDEFPKKPAVVKKTVTPPANLKSYSIADLQIATGSFSVDQLLGEGSFGRVLAVKKIDSSVIPNNLSEDFMEIVSNLSRLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHEFLHLPDEFIKPLIWNSRVKIALGIARALEYLHEVCSPSVVHKNIKAANILLDTDLNPHLSDSGLASYIPNANQVLNNNAGSGYDAPEVGLSGQYTLKSDVYSFGVVMLELLSGRKPFD 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3081g00001 337 SUPERFAMILY Protein kinase-like (PK-like) 125 337 IPR011009 -
Trme3081g00001 337 Gene3D Transferase(Phosphotransferase) domain 1 213 337 - -
Trme3081g00001 337 Pfam Protein tyrosine and serine/threonine kinase 159 336 IPR001245 GO:0004672|GO:0006468
Trme3081g00001 337 ProSiteProfiles Protein kinase domain profile. 144 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3081g00001 337 Gene3D Phosphorylase Kinase; domain 1 107 211 - -
Trme3081g00001 337 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 109 211 - -
Trme3081g00001 337 MobiDBLite consensus disorder prediction 29 53 - -
Trme3081g00001 337 MobiDBLite consensus disorder prediction 90 113 - -
Trme3081g00001 337 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 212 337 - -
Trme3081g00001 337 MobiDBLite consensus disorder prediction 1 55 - -
Trme3081g00001 337 PANTHER OS01G0253100 PROTEIN 77 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3081g00001 Trme-Chr3081 29 2109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3081g00001 34 337 Strubbelig Receptor Gene Family AT1G53730 58.824 3.97e-121 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trme3081g00001 PK_Tyr_Ser-Thr 3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3081g00001 - - gmx:100817422 473.396