Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30659g00001 ATGTTCTGCAAGACTCTCACAGCTTCTGACACTAGCACTCATGGAGGATTCTCAGTNCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGCCAGCAGAGACCTTCACAAGAGCTTGTAGCTAAGGATCTGCATGGCTTGGAGTGGAGGTTTCGTCACATATATAGGGGGCAGCCAAGGAGGCATTTGCTGACAACCGGGTGGAGTGCATTTGTGAACAAGAAGAAGCTTGTGTCTGGTGATGCTGTGTTGTTTCTTAGGGGTGATGATGGAGAACTGAGACTAGGGATTCGAAGGGCGGTGCAGTTGAAAAGTTCTGGTTCATTTGCAGCTCCTTCTGGTATGCAATTGGATCCTGGCTCTCTCATGGATGTGGTGAATGCTTTATCTAAAAGATCTGCCTTCAGCGTTTGCTATAATCCAAG 434 0.4816 MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAVQLKSSGSFAAPSGMQLDPGSLMDVVNALSKRSAFSVCYNP 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30659g00001 144 SMART B3_2 2 104 IPR003340 GO:0003677
Trme30659g00001 144 FunFam Auxin response factor 1 104 - -
Trme30659g00001 144 SUPERFAMILY DNA-binding pseudobarrel domain 1 110 IPR015300 -
Trme30659g00001 144 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 144 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme30659g00001 144 Pfam B3 DNA binding domain 2 103 IPR003340 GO:0003677
Trme30659g00001 144 Gene3D - 1 104 IPR015300 -
Trme30659g00001 144 ProSiteProfiles B3 DNA-binding domain profile. 2 104 IPR003340 GO:0003677
Trme30659g00001 144 CDD B3_DNA 1 102 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30659g00001 Trme-Chr30659 131 970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30659g00001 1 144 B3 DNA Binding Superfamily AT2G33860 75.694 3.11e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme30659g00001 B3 1.1e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30659g00001 K14486 - gmx:100810458 275.789