Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme306282g00001 ATGGCGGTTCCTTTTCTTCTCCGTTCTCTCTACTCTTCCACCAAAAAATCTTTTTCCTCTTCTTCACCTTTCACTCCATCTCCCTCTCGTTTCTTCTCCCGCGCTTTCTCTTCAGCACCCGCCGCTGCCACCGATCCCACCGTATCCCCTGACCCTAGCCGCCTCCGCAACGTCGCCGTCATCGCTCATGTCGACCACGGCAAGACAACTCTCATGGACCGACTTCTCCGTCAGTGCGGTGCTGATATCCCTCACGAACGCGCCATGGATTCATTTTCGCTCGAAATTGAGCGCGGCATCACCATCTCTTCCAAGGTTCGTTTCACT 327 0.5443 MAVPFLLRSLYSSTKKSFSSSSPFTPSPSRFFSRAFSSAPAAATDPTVSPDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSFSLEIERGITISSKVRFT 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme306282g00001 109 PRINTS GTP-binding elongation factor signature 57 70 IPR000795 GO:0003924|GO:0005525
Trme306282g00001 109 PRINTS GTP-binding elongation factor signature 97 105 IPR000795 GO:0003924|GO:0005525
Trme306282g00001 109 Gene3D - 47 109 IPR027417 -
Trme306282g00001 109 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 51 105 - -
Trme306282g00001 109 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 53 109 IPR000795 GO:0003924|GO:0005525
Trme306282g00001 109 Pfam Elongation factor Tu GTP binding domain 54 106 IPR000795 GO:0003924|GO:0005525
Trme306282g00001 109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 107 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme306282g00001 Trme-Chr306282 17 343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme306282g00001 54 104 Eukaryotic Initiation Factors Gene Family AT3G22980 42.105 1.23e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme306282g00001 K06207 - tcc:18612952 120.168