Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30620g00001 TGTTGTGAATGGTGGAATGAACATGACCGGCGGATTGCTACTCTTGAGTTTGACCGTGACAGGAAGTCAATGGGTGTTATTGTAGACTCTGGTGCGGGGAGAAAGTCGCTTCTGGTTAAGGTATTATCTCTTTCTGCTATAACATAG 147 0.449 CCEWWNEHDRRIATLEFDRDRKSMGVIVDSGAGRKSLLVKVLSLSAIT 48
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30620g00001 48 Gene3D - 1 41 IPR023299 GO:0000166
Trme30620g00001 48 Pfam Cation transport ATPase (P-type) 2 40 - -
Trme30620g00001 48 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 40 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30620g00001 Trme-Chr30620 361 507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30620g00001 1 40 Primary Pumps ATPases(2) AT1G07670 72.500 8.18e-16 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30620g00001 K01537 - gmx:100812151 75.485