Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30617g00001 ATGGCGTCGAGTCAACAACGTCCTGTAAGTTCAGGATCGGACGGCGGAGATCTACAAATTGACGAGAGGAAGAGAAAGAGAATGTTATCTAACCGTGAATCCGCGAGACGATCGAGGATGAGAAAGCAGAAACAGATTGAAGATCTGACTGAAGAGTCTGGTAAATTGCAAATCGAGAACGATCGTGTGGCGAAGAGGATAAAAGCTACGGAAGAAGCTTATGTGGAGATGGAAGCTGCAAATAATGTTATCAGAGCACAGACTATGGAATTGGCGGAACGATTGCGGTTTCTGAATTCGGTTATTGATGTTGCTGAAGATGTTAACGGTTTTTCTGTTGAAATGGCTATGATTCCTGATCCTCTTCTTAAACCTTG 377 0.435 MASSQQRPVSSGSDGGDLQIDERKRKRMLSNRESARRSRMRKQKQIEDLTEESGKLQIENDRVAKRIKATEEAYVEMEAANNVIRAQTMELAERLRFLNSVIDVAEDVNGFSVEMAMIPDPLLKP 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30617g00001 125 CDD bZIP_plant_GBF1 24 74 IPR045314 GO:0003700|GO:0006355
Trme30617g00001 125 SUPERFAMILY Leucine zipper domain 23 77 IPR046347 GO:0003700|GO:0006355
Trme30617g00001 125 Coils Coil 32 80 - -
Trme30617g00001 125 MobiDBLite consensus disorder prediction 17 52 - -
Trme30617g00001 125 MobiDBLite consensus disorder prediction 1 52 - -
Trme30617g00001 125 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Trme30617g00001 125 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 84 IPR004827 GO:0003700|GO:0006355
Trme30617g00001 125 FunFam BZIP transcription factor 21 72 - -
Trme30617g00001 125 PANTHER BZIP TRANSCRIPTION FACTOR 44 8 105 - -
Trme30617g00001 125 Pfam bZIP transcription factor 23 81 IPR004827 GO:0003700|GO:0006355
Trme30617g00001 125 Gene3D - 21 78 - -
Trme30617g00001 125 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30617g00001 Trme-Chr30617 441 817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30617g00001 21 125 bZIP Transcription Factor Family AT3G62420 50.476 4.43e-32 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trme30617g00001 bZIP_1 4.6e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30617g00001 K25786 - gmx:780550 162.54