Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30610g00001 ATGCCTGTCCCAGTTTGCTCGTGTACCGGAGTACCACGACAGTGCTACAAATGGGGGAATGGTGGATGGCAATCATCTTGTTGTACCACTACATTATCAATGCATCCACTACCACAGCTTCCCAACAAGCGCCATGCTCGCATTGGAGGGCGGAAAATGAGTGGCAGTGTTTTTATCAGACTTCTCAGTAGGTTTGCATCAGAAGGCCATGATTTATCTATACCATTGGATCTTAAGGATTACTGGGCCAGACATGGAACAAATCGNTACATTACTATCAAGTAG 285 0.4561 MPVPVCSCTGVPRQCYKWGNGGWQSSCCTTTLSMHPLPQLPNKRHARIGGRKMSGSVFIRLLSRFASEGHDLSIPLDLKDYWARHGTNRYITIK 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30610g00001 94 PANTHER - 1 94 IPR010409 -
Trme30610g00001 94 SMART GAGA_bind_2 1 94 IPR010409 -
Trme30610g00001 94 Pfam GAGA binding protein-like family 1 94 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30610g00001 Trme-Chr30610 715 999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30610g00001 1 94 BBR or BPC Transcription factor family AT4G38910 82.979 4.97e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Trme30610g00001 GAGA_bind 4.9e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30610g00001 - - gmx:100785547 196.823