Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme305914g00001 ATGAGAGAGAGTGTAGAGAGAGAAACAGTGAGAGAAAGTGGGAACGCAAGGACTGGTTTGGGAAGGAAAAGAGACTTTATCACTAAGCTTGATAAGGTTACTACGTCCTTTTTCGTGACCAATTTCCCGGACGATGCTACGTCTGATGATCTTTGGAAACTCTTTCTGAAGTTTGGCAAGGTAGGGGAAGTCTACATTCCAAAGAAGCTTGACAAGAGGGGAAGGCGGTTTGGCTTTGTGAAGTTT 246 0.4431 MRESVERETVRESGNARTGLGRKRDFITKLDKVTTSFFVTNFPDDATSDDLWKLFLKFGKVGEVYIPKKLDKRGRRFGFVKF 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme305914g00001 82 SUPERFAMILY RNA-binding domain, RBD 30 82 IPR035979 GO:0003676
Trme305914g00001 82 Gene3D - 1 82 IPR012677 -
Trme305914g00001 82 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 82 IPR000504 GO:0003723
Trme305914g00001 82 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 82 IPR000504 GO:0003723
Trme305914g00001 82 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 34 82 - -
Trme305914g00001 82 CDD RRM_SF 38 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme305914g00001 Trme-Chr305914 1 246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme305914g00001 32 82 Eukaryotic Initiation Factors Gene Family AT1G34140 39.216 1.26e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme305914g00001 - K12891 gmx:121173424 64.6994