Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30586g00001 CTGTTGCCATCTAAGATTCAAGTGGGAGTTTTCTCTGCTACCATGCCTCCTGAGGCGCTTGAGATCACAAGGAAGTTTATGAACAAACCTGTGAGAATTCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATAAAACAATTTTATGTCAATGTTGATAAAGAGGAATGGAAGCTCGACACACTCTGTGATCTTTATGAGACATTGGCAATCACTCAGAGTGTCATTTTTGTCAACACCAGACGGAAGGTTGACTGGCTGACTGACAAGATGAGAAGCCGTGACCACACTGTCTCAGCAACACACGGAGACATGGACCAGAATACTAGAGACATTATTATGCGTGAATTCCGTTCTGGATCTTCCCGTGTTTTAATCACTACTGATCTTCTTGCTCGTGGTATTGATGTCCAGCAAGTGTCTTTAGTTATAAATTATGATCTCCCCACACAGCCTGAAAACTACCTCCATCGTATTGGTCGTAGTGGAAGGTTCGGTAGGAAAGGTGTTGCCATTAACTTTGTCACAACAGATGATGAAAGAATGCTGAGTGACATCCAGAAGTTCTACAATGTGATAATTGAGGAGCTGCCTTCCAATGTTGCCGAACTTCTGTGA 618 0.4337 MLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSDIQKFYNVIIEELPSNVAELL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30586g00001 205 CDD SF2_C_DEAD 45 175 - -
Trme30586g00001 205 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 189 - -
Trme30586g00001 205 FunFam Eukaryotic initiation factor 4A-III 39 205 - -
Trme30586g00001 205 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 44 205 IPR001650 -
Trme30586g00001 205 Pfam Helicase conserved C-terminal domain 58 166 IPR001650 -
Trme30586g00001 205 SMART helicmild6 85 166 IPR001650 -
Trme30586g00001 205 Gene3D - 41 205 IPR027417 -
Trme30586g00001 205 Gene3D - 1 40 IPR027417 -
Trme30586g00001 205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 201 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30586g00001 Trme-Chr30586 63 680 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30586g00001 1 205 Eukaryotic Initiation Factors Gene Family AT1G72730 93.659 2.12e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30586g00001 K03257 - sly:101244494 398.282