Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme305494g00001 ATGGTGAGAGTAGCGGTGATAGGTGTGAAGATAGCCGATATACTAGCGGATGATTATCCGTGGAGGAAGTATGGTCAGAAATCGATAAAAGGGATAATTGTATCCATGGG 110 0.4364 MVRVAVIGVKIADILADDYPWRKYGQKSIKGIIVSMG 37
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme305494g00001 37 ProSiteProfiles WRKY domain profile. 10 37 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme305494g00001 37 Gene3D WRKY domain 2 35 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme305494g00001 37 Pfam WRKY DNA -binding domain 17 31 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme305494g00001 37 SUPERFAMILY WRKY DNA-binding domain 12 32 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme305494g00001 Trme-Chr305494 102 211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme305494g00001 2 31 WRKY Transcription Factor Family AT4G31550 70.000 2.32e-09 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme305494g00001 WRKY 4.9e-05 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme305494g00001 - - vvo:131646899 49.2914