Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30545g00001 ATGTCAAGATCTTCAACACAAGAGTATGATACGAATAAGGATATCCGCAGCCGCCCCCAACCAGTTATCTCTGGACCTATTCGTCCGACAGAGAGAGGCGGTGCTTTGGTTGTATCAGCAGAGGACCTTGTGGCTTCACGTAAAGGATCACCTTCAGAAATAATTAGCCCTGATGAAAAAACTGCAGCTGTAGCTGGATTCTCCCCATCGAAACACAGCCACTTTTCATGGTCACCTGAGTCTGGTGATTCATTGACCGCTGAAAATCTTTCAAGACTAGATACGAGGTCGCCGGATAGGTTAATTGGAGAGCTGCATTTTCTTGATGATACAATATCGTTGACGCCTGAGGAGCTATCGAGGGCACCGGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCTTACAAGGCAACTATGGATAATGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTGGCGAAACAAAGGAAAGAGTTTGTTAAAGAGATAAGAAAGTTCGCAAACATCAGGCATCCAAATGTTGTCGGTTTGAAAGGTTATTATTGGGGTCCTACGCAGCACGAGAAGCTTATTCTTTCTGATTACATTTCACCAGGAAGTCTTGCAAGTTTTCTTTATGGAGCTTTTGATTACAAGATTGTCAATTAA 657 0.4338 MSRSSTQEYDTNKDIRSRPQPVISGPIRPTERGGALVVSAEDLVASRKGSPSEIISPDEKTAAVAGFSPSKHSHFSWSPESGDSLTAENLSRLDTRSPDRLIGELHFLDDTISLTPEELSRAPAEVLGRSSHGTSYKATMDNGLLLRVKWLREGVAKQRKEFVKEIRKFANIRHPNVVGLKGYYWGPTQHEKLILSDYISPGSLASFLYGAFDYKIVN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30545g00001 218 ProSiteProfiles Protein kinase domain profile. 121 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme30545g00001 218 Pfam Protein tyrosine and serine/threonine kinase 125 208 IPR001245 GO:0004672|GO:0006468
Trme30545g00001 218 SUPERFAMILY Protein kinase-like (PK-like) 124 210 IPR011009 -
Trme30545g00001 218 MobiDBLite consensus disorder prediction 1 33 - -
Trme30545g00001 218 PANTHER OS07G0626500 PROTEIN 60 209 - -
Trme30545g00001 218 Gene3D Phosphorylase Kinase; domain 1 110 198 - -
Trme30545g00001 218 FunFam Leucine-rich repeat receptor-like protein kinase 106 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30545g00001 Trme-Chr30545 117 1029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30545g00001 103 210 Receptor kinase-like Gene Family AT1G67510 45.370 2.94e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme30545g00001 PK_Tyr_Ser-Thr 1.9e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30545g00001 - - lja:Lj0g3v0361919.1 378.637