LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme305380g00001	GACCGTTTGAGGGGCCATCTGGACTATTACTATGCATCTGCGTGGCATCCTGAAGGGTATAGGTTCGCCACAGGGAATCAAGATAGGAGTTATCGCGTGTGGGATGCTCAGAATGCTGGACATCCTTTGTTCGTTCTCAAGGGCAATATAGGAGTGACTAATGCCATTCGTTTCAGCTCAGATGGGAAGTTTATGGCGATGGCGGAATATGTCGATTATGTCCACATATACAATGTTGAAAGAGAGTTTGAGTTTCAGCAAGAAATTGATTTCTTTGGGAAGACATCATGA	291	0.4467	DRLRGHLDYYYASAWHPEGYRFATGNQDRSYRVWDAQNAGHPLFVLKGNIGVTNAIRFSSDGKFMAMAEYVDYVHIYNVEREFEFQQEIDFFGKTS	96

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme305380g00001	96	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	3	38	-	-
	Trme305380g00001	96	SUPERFAMILY	WD40 repeat-like	3	82	IPR036322	GO:0005515
	Trme305380g00001	96	Gene3D	-	1	92	IPR015943	GO:0005515
	Trme305380g00001	96	ProSiteProfiles	Trp-Asp (WD) repeats profile.	3	38	IPR001680	GO:0005515
	Trme305380g00001	96	PANTHER	WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED	2	96	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme305380g00001	Trme-Chr305380	3	293	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme305380g00001	10	86	U-box Gene Family	AT2G33340	29.870	5.30e-07	44.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme305380g00001	-		-	sspl:121775070	135.191

Showing 1 to 1 of 1 entries