Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme305380g00001 GACCGTTTGAGGGGCCATCTGGACTATTACTATGCATCTGCGTGGCATCCTGAAGGGTATAGGTTCGCCACAGGGAATCAAGATAGGAGTTATCGCGTGTGGGATGCTCAGAATGCTGGACATCCTTTGTTCGTTCTCAAGGGCAATATAGGAGTGACTAATGCCATTCGTTTCAGCTCAGATGGGAAGTTTATGGCGATGGCGGAATATGTCGATTATGTCCACATATACAATGTTGAAAGAGAGTTTGAGTTTCAGCAAGAAATTGATTTCTTTGGGAAGACATCATGA 291 0.4467 DRLRGHLDYYYASAWHPEGYRFATGNQDRSYRVWDAQNAGHPLFVLKGNIGVTNAIRFSSDGKFMAMAEYVDYVHIYNVEREFEFQQEIDFFGKTS 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme305380g00001 96 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 3 38 - -
Trme305380g00001 96 SUPERFAMILY WD40 repeat-like 3 82 IPR036322 GO:0005515
Trme305380g00001 96 Gene3D - 1 92 IPR015943 GO:0005515
Trme305380g00001 96 ProSiteProfiles Trp-Asp (WD) repeats profile. 3 38 IPR001680 GO:0005515
Trme305380g00001 96 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 2 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme305380g00001 Trme-Chr305380 3 293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme305380g00001 10 86 U-box Gene Family AT2G33340 29.870 5.30e-07 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme305380g00001 - - sspl:121775070 135.191