Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30520g00001 ATGGAAGGAATCCTAGTATGTGCAGCTCCTCATTGTCTCAAGACATTCTTCAAGAGAGCTGAATTTGAATCTCATATCCATGAATACCACGCTGATCTTATTCCCTCCAATCCAGATAAAGAAGACGGAAATGAGTCAGAGGCACAAAGTGTTAGACAACCTACAGCCTCAGACTCCACTGCTCGAGGCCCCCAAAGGCAAGTTTTTTCACCAGGTTCAAATTCTCAACCCCATGATCTGGAAGAGAGAACCCGTCGGCAACCAGTAAGAGATCAAACTCCTTCAAGGCCAACAATGCAGCAAAAGCCACCATTTTTC 318 0.4528 MEGILVCAAPHCLKTFFKRAEFESHIHEYHADLIPSNPDKEDGNESEAQSVRQPTASDSTARGPQRQVFSPGSNSQPHDLEERTRRQPVRDQTPSRPTMQQKPPFF 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30520g00001 106 MobiDBLite consensus disorder prediction 48 77 - -
Trme30520g00001 106 MobiDBLite consensus disorder prediction 31 47 - -
Trme30520g00001 106 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 105 IPR040383 GO:0016567|GO:0061630
Trme30520g00001 106 MobiDBLite consensus disorder prediction 31 106 - -
Trme30520g00001 106 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 35 IPR013087 -
Trme30520g00001 106 ProSitePatterns Zinc finger C2H2 type domain signature. 7 30 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30520g00001 Trme-Chr30520 1 318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30520g00001 1 66 C2H2 Transcription Factor Family AT5G01160 52.239 5.11e-21 84.0