Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30475g00001 ATGTTATCCTCTTGTGACCAGGTTCAAATTCTTAGTAGTCTCCAACATCCTCATTTATTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTTCCGAATGGAACTCTTCAAAACTACCTATTTCGAAAAAGTAACATTATCCCTTTGACATGGAATATCAGAACACGGATGATTGCCGAAATTTCCAGTGCACTTTGTTTCTTACATTCGTTTAAACCGGAAGCTATTATCCATGGGGATCTTAAGCCTGAGACTATACTTCTTGATTCTTCACTTAGTTGCAAGATATGTGAATTCAGGTTCAGTAGGCTTGGGACAGAGGAGTCTCTCTATAGTCCTAGTAGTAGTTTCCACTTGAGCACTGAGCCAAAGGGTGCTTTCACATATACGGATCCCGAGTTTCAGCGAACTGGGGTACTAACAACCAAGTCTGACATCTACTCCTTTGGGCTTATTATTTTGCAACTCCTCACTGGTAGGACTCCAGTTGGATTAGCAGTTCTAGTTCGACATGCAGTTTCATGTGGAAAATTGTCGTCAATTATTGATTCTTCAGCTGGAGAATGGCCTTTATCTGTAGCATCACGGTTGGTTGAACTGGAAGAGAGACCCGTGCCATCTTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAATCGCAGCAGATGGATTTACATATGAAGGGGATGCCATACGTGAATGGTTGGAAAATGGGCATGATACGTCTCCGATGACTAATTTAAAATTGAGTCACTTGCTTCTCACTCCCAATCACTCAATTAGACTTGCCATCCAAGATTGGCTCTGCAAATCATAA 846 0.4137 MLSSCDQVQILSSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQNYLFRKSNIIPLTWNIRTRMIAEISSALCFLHSFKPEAIIHGDLKPETILLDSSLSCKICEFRFSRLGTEESLYSPSSSFHLSTEPKGAFTYTDPEFQRTGVLTTKSDIYSFGLIILQLLTGRTPVGLAVLVRHAVSCGKLSSIIDSSAGEWPLSVASRLVELEERPVPSFFLCPILQEIMHDPQIAADGFTYEGDAIREWLENGHDTSPMTNLKLSHLLLTPNHSIRLAIQDWLCKS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30475g00001 281 SUPERFAMILY RING/U-box 204 280 - -
Trme30475g00001 281 Gene3D Transferase(Phosphotransferase) domain 1 3 210 - -
Trme30475g00001 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 281 IPR013083 -
Trme30475g00001 281 Pfam U-box domain 211 280 IPR003613 GO:0004842|GO:0016567
Trme30475g00001 281 SMART Ubox_2 214 277 IPR003613 GO:0004842|GO:0016567
Trme30475g00001 281 SUPERFAMILY Protein kinase-like (PK-like) 7 170 IPR011009 -
Trme30475g00001 281 Pfam Protein tyrosine and serine/threonine kinase 6 169 IPR001245 GO:0004672|GO:0006468
Trme30475g00001 281 CDD RING-Ubox_WDSUB1-like 212 267 - -
Trme30475g00001 281 PANTHER OS02G0152300 PROTEIN 7 275 - -
Trme30475g00001 281 ProSiteProfiles Protein kinase domain profile. 1 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme30475g00001 281 ProSiteProfiles U-box domain profile. 210 281 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30475g00001 Trme-Chr30475 103 1123 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30475g00001 7 278 U-box Gene Family AT2G45910 44.728 1.13e-86 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trme30475g00001 PK_Tyr_Ser-Thr 3.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30475g00001 - - gmx:100788846 464.151