Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3046g00001 ATGTTTGTACCTTCCAAGGTTCAAAGAGGCATACTTCCCCGTCTATTGGAAGAAATTTTATCAACTAGAATAATGGTAAAACAGGCAATGAAAAAGTTGTCTCCTTCAGAGCAAGTCCTTCAGCGGATATTTAATGCACGACAGCTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCGGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGCATTGTTCAATGTGGACGGTGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTGTCAAAGAGTCCTTCCAAATTGGGAGTGAGATTGCTTCTGCTATCACTGCTATGAATCCTAGTCCTGTCACCTTGAAGATGGAGAAAGTTTATCACCCGTGTTTCCTCATTACTAAAAAGAGATATGTTGGCTACAGTTATGAAAGCCCCAATCAAATTGAACCTGTTTTTGATGCCAAAGGTATTGAAACAGTACGCAGGGACACGTGTGAAGCAGTTGCAAAAACAATGGAGCGATCTTTGAGACTTTTTTTTGAGCACCAGAGTGTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCAGGCAGAGTTTCCCTTAAGGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCAACTAAGGCAATGAGGGTTGATCGTAGGGCTGAACCACGTTATGCAGAGAGAATACCTTACGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGATATGGTTGTTGATCCATTGGAA 897 0.4214 MFVPSKVQRGILPRLLEEILSTRIMVKQAMKKLSPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTVKESFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLITKKRYVGYSYESPNQIEPVFDAKGIETVRRDTCEAVAKTMERSLRLFFEHQSVLEVKTYLQRQWKRILSGRVSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDRRAEPRYAERIPYVVIHGEPGARLVDMVVDPLE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3046g00001 299 Gene3D Helix hairpin bin 5 64 - -
Trme3046g00001 299 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 1 299 IPR030559 GO:0006281|GO:0016035|GO:0019985
Trme3046g00001 299 Gene3D - 181 299 IPR042087 -
Trme3046g00001 299 FunFam DNA polymerase zeta 6 65 - -
Trme3046g00001 299 Gene3D Palm domain of DNA polymerase 65 176 IPR023211 -
Trme3046g00001 299 SUPERFAMILY DNA/RNA polymerases 5 297 IPR043502 -
Trme3046g00001 299 ProSitePatterns DNA polymerase family B signature. 106 114 IPR017964 GO:0000166|GO:0003676
Trme3046g00001 299 Pfam DNA polymerase family B 2 286 IPR006134 GO:0000166|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3046g00001 Trme-Chr3046 66 2322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3046g00001 2 298 Core DNA Replication Machinery Family AT5G63960 32.895 3.48e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3046g00001 K02350 - gmx:100777934 548.51