Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30436g00001 TGCATTGTTCAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCCACTCCAGGACGATTAGTAGATTTGCTTGAGAGGGCTAGGGTTTCATTACAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACACTGCTGTTTAGTGCAACATTTCCCAAAGAGATACAGACTGTCATAATTGCTGGTCAATCTTTAACAGAAAAATACCCCAACCATAGTCAACCTTGA 315 0.4317 CIVQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQTVIIAGQSLTEKYPNHSQP 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30436g00001 104 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 7 87 - -
Trme30436g00001 104 Pfam DEAD/DEAH box helicase 4 86 IPR011545 GO:0003676|GO:0005524
Trme30436g00001 104 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 98 IPR014001 -
Trme30436g00001 104 Gene3D - 3 95 IPR027417 -
Trme30436g00001 104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 88 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30436g00001 Trme-Chr30436 2 534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30436g00001 5 84 Eukaryotic Initiation Factors Gene Family AT3G19760 41.250 2.08e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30436g00001 K11594 - oeu:111401076 162.155