Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30413g00001 ATGTTATCCTCTTGTGACCAGGTTCAAATTCTTAGTAGTCTCCAACATCCTCATTTATTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTTCCGAATGGAACTCTTCAAAACTACCTATTTCGAAAAAGTAACATTATCCCTTTGACATGGAATATCAGAACACGGATGATTGCCGAAATTTCCAGTGCACTTTGTTTCTTACATTCGTTTAAACCGGAAGCTATTATCCATGGGGATCTTAAGCCTGAGACTATACTTCTTGATTCTTCACTTAGTTGCAAGATATGTGAATTCAGGTTCAGTAGGCTTGGGACAGAGGAGTCTCTCTATAGTCCTAGTAGTAGTTTCCACTTGAGCACTGAGCCAAAGGGTGCTTTCACATATACGGATCCCGAGTTTCAGCGAACTGGGGTACTAACAACCAAGTCCGACATCTACTCCTTTGGGCTTATTATTTTGCAACTCCTCACTGGTAGGACTCCAGTTGGACTAGCAGTTCTAGTTCGACATGCAGTTTCATGTGGAAAATTGTCATCCATTCTCGATTCTTCAGCTGGAGAATGGCCTTTATCCGTAGCATCACGGTTGGTTGAACTGGGTTTGCAATGTTGCGCGCAAAATCGTAGAAGCAGACCAGAGTTAACACCTACTCTTNNNNNNNNNNTGGAACAGTTACATGTTTCAGAAGAGAGACCCGTGCCATCTTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAATCGCAGCAGATGGATTTACATATGAAGGGGATGCCATACGTGAATGGTTGGAAAATGGGCATGATACGTCTCCGATGACTAATTTAAAATTGAGTCACTTGCTTCTCACTCCCAATCACTCAATTAGACTTGCCATCCAAGATTGGCTCTGCAAATCATAA 933 0.4159 MLSSCDQVQILSSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQNYLFRKSNIIPLTWNIRTRMIAEISSALCFLHSFKPEAIIHGDLKPETILLDSSLSCKICEFRFSRLGTEESLYSPSSSFHLSTEPKGAFTYTDPEFQRTGVLTTKSDIYSFGLIILQLLTGRTPVGLAVLVRHAVSCGKLSSILDSSAGEWPLSVASRLVELGLQCCAQNRRSRPELTPTLXXXXEQLHVSEERPVPSFFLCPILQEIMHDPQIAADGFTYEGDAIREWLENGHDTSPMTNLKLSHLLLTPNHSIRLAIQDWLCKS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30413g00001 310 Pfam U-box domain 240 309 IPR003613 GO:0004842|GO:0016567
Trme30413g00001 310 PANTHER OS02G0152300 PROTEIN 7 304 - -
Trme30413g00001 310 Pfam Protein tyrosine and serine/threonine kinase 6 222 IPR001245 GO:0004672|GO:0006468
Trme30413g00001 310 Gene3D Phosphorylase Kinase; domain 1 3 40 - -
Trme30413g00001 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 310 IPR013083 -
Trme30413g00001 310 ProSiteProfiles U-box domain profile. 239 310 IPR003613 GO:0004842|GO:0016567
Trme30413g00001 310 CDD RING-Ubox_WDSUB1-like 241 296 - -
Trme30413g00001 310 SUPERFAMILY Protein kinase-like (PK-like) 7 241 IPR011009 -
Trme30413g00001 310 Gene3D Transferase(Phosphotransferase) domain 1 41 238 - -
Trme30413g00001 310 ProSiteProfiles Protein kinase domain profile. 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme30413g00001 310 SUPERFAMILY RING/U-box 237 309 - -
Trme30413g00001 310 SMART Ubox_2 243 306 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30413g00001 Trme-Chr30413 48 1068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30413g00001 7 307 U-box Gene Family AT2G45910 47.284 5.06e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trme30413g00001 PK_Tyr_Ser-Thr 2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30413g00001 - - gmx:100788846 508.449