Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30410g00001 ATGTCAATTCATTCAATGAGTTCAAGCAAGAGGAACAATAGTTTAAACCATTCAGGATCAAAGAAACCTGTGACTGTGAGATATGGTTCAAAAGGTGGTGGTGATTCTGATGGATTGACTATGTCACAAAGGGAACTTAGAGATGAAGATGCAAGATTGGTTTATATCAATGATCCTGAGAAAACCAATGATAGTTTCGAATTTTTCGGAAATTCAATAAGAACTGCTAAATACTCAATCCTTACTTTCATTCCAAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATGTATATTTTCTCATCATTGCTATTCTCAATCAGCTTCCTCAACTTGCAGTTTTCGGAAGATATGTTTCGATTCTACCATTAGCTTTCGTTCTGTTTGTTACCGGTGTGAAAGATGCTTTTGAAGATTGGAGGAGNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTGATGGTAGTTTCATAGAGAAGAAATGGAAGGATATTAGGGTTGGTGAGATTGTAAAAATCAAAACAAATGAAACAATTCCTTGTGATATTGTTTTGTTGTCAACTAGTGATCCAACTGGTGTTGCATATGTGCAAACTATTAATCTTGATGGTGAGTCTAATTTGAAGACTCGGTATGCGAAACAAGAGACAGGTTCAAAGGTTCAACCGAGGTATACTGGTTTGATTAAGTGYGAGAAACCGAATAGGAATATTTATGGATTTATGGCGAATATGGAAATTGATGGTAAGAAGTTATCACTTGGATCAACCAACATTGTGCTTAGAGGATGTGAGCTCAAAAATACTAGTTGGGCGCTTGGTGTTGCGGTTTATTGTGGCCGCGATACCAAAGCTATGCTCAACAGTTCAGGAGCTCCATCGAAGAGAAGTAGGCTTGAGACACGGATGAATTACGAAATCATTATGCTGTCCTC 953 0.3536 MSIHSMSSSKRNNSLNHSGSKKPVTVRYGSKGGGDSDGLTMSQRELRDEDARLVYINDPEKTNDSFEFFGNSIRTAKYSILTFIPRNLFEQFHRVAYVYFLIIAILNQLPQLAVFGRYVSILPLAFVLFVTGVKDAFEDWRXXXXXXXXXXXXXXXXXXDGSFIEKKWKDIRVGEIVKIKTNETIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETGSKVQPRYTGLIKCEKPNRNIYGFMANMEIDGKKLSLGSTNIVLRGCELKNTSWALGVAVYCGRDTKAMLNSSGAPSKRSRLETRMNYEIIMLSS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30410g00001 318 SUPERFAMILY Calcium ATPase, transduction domain A 158 291 IPR008250 -
Trme30410g00001 318 SUPERFAMILY Calcium ATPase, transmembrane domain M 70 314 IPR023298 -
Trme30410g00001 318 MobiDBLite consensus disorder prediction 1 23 - -
Trme30410g00001 318 Pfam Phospholipid-translocating ATPase N-terminal 54 121 IPR032631 -
Trme30410g00001 318 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 45 316 - -
Trme30410g00001 318 MobiDBLite consensus disorder prediction 1 41 - -
Trme30410g00001 318 FunFam Phospholipid-transporting ATPase 126 294 - -
Trme30410g00001 318 Gene3D - 153 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30410g00001 Trme-Chr30410 1 953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30410g00001 8 317 Primary Pumps ATPases AT5G04930 66.879 7.88e-143 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30410g00001 K14802 - gmx:100813982 466.463