Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30399g00001 ATGTTTTCTCAACGAGATCCAAGTGTTCGGAAAAGTGGATCTGGCAATGTGTTCATTAAGAACCTGGACAAATCGATTGATCACAAGACATTGCACACCATTTTTGCTGTCTTTGGCTCTATACTTTCTTGTAAAGTGGCTCTTGACGGCAATGGTCAGTCAAAAGGGTATGGTTTTGTTCAATTTGACAATGAAGAATCTGCGAAGAGTGCCATCAAACAGTTGAATGGCATGTTGCTAAATGATAAACAAGTATATGTTGCATTTTTCGTTTGCTACCAGGAAAGGGCTAGGCTCAATCAATCACCCAAGTTTACTAATGTGTATATTAAAAATCTTTCTGAAACACTAAGTGATGAAGACTTGAAGAAGCTATTTTGCCCTTTTGGCATAATAACCAGTGCAAGAGTCATGAAAGATGCAAATGGCAAATCCAGATGCTTTGGATTTGTAAATTTTCAGAGTCCAGATTCTGCTGCTGCTGCAGTTGAGAACTTAAACGGAACTACTATCAATAGTGACAAAGTCTTATATGTGGGGAGAGCTCAAAGCAAAGAAGAAAGAGACCGTGAGTTGAAAGCAAAATTAGAGCAGGAAAGAATTACAAGATATGAGAAGTTACAGAGGTCTAATCTGTACTTGAAAAATCTTGATGATGATTTTTGCGAGGAAAAGTTGAAGGAGCTATTTTGTAAGTTTGGAACTATAACGTCTTGCAAGGTGATGTTGGATTCTCGTGGTCATAGTACGGGTTCTGGTTTCGTGGCATTTTCAACTCCAGAGGAAGCTGATAAAGCGATGAATGAAATGAATGGTAAGTTTGTTGGAAGAAAGCCTTTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCCCAGTTGCAGGTGATG 894 0.3926 MFSQRDPSVRKSGSGNVFIKNLDKSIDHKTLHTIFAVFGSILSCKVALDGNGQSKGYGFVQFDNEESAKSAIKQLNGMLLNDKQVYVAFFVCYQERARLNQSPKFTNVYIKNLSETLSDEDLKKLFCPFGIITSARVMKDANGKSRCFGFVNFQSPDSAAAAVENLNGTTINSDKVLYVGRAQSKEERDRELKAKLEQERITRYEKLQRSNLYLKNLDDDFCEEKLKELFCKFGTITSCKVMLDSRGHSTGSGFVAFSTPEEADKAMNEMNGKFVGRKPLFVAVAQRKEERKAQLQVM 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30399g00001 298 Coils Coil 182 202 - -
Trme30399g00001 298 SMART rrm2_1 211 282 IPR003954 GO:0003676
Trme30399g00001 298 SMART rrm2_1 107 179 IPR003954 GO:0003676
Trme30399g00001 298 SMART rrm2_1 16 88 IPR003954 GO:0003676
Trme30399g00001 298 SUPERFAMILY RNA-binding domain, RBD 15 188 IPR035979 GO:0003676
Trme30399g00001 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Trme30399g00001 298 Gene3D - 3 89 IPR012677 -
Trme30399g00001 298 CDD RRM3_I_PABPs 105 185 - -
Trme30399g00001 298 SMART rrm1_1 16 88 IPR000504 GO:0003723
Trme30399g00001 298 SMART rrm1_1 211 283 IPR000504 GO:0003723
Trme30399g00001 298 SMART rrm1_1 107 180 IPR000504 GO:0003723
Trme30399g00001 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 89 IPR000504 GO:0003723
Trme30399g00001 298 Gene3D - 195 296 IPR012677 -
Trme30399g00001 298 Gene3D - 91 194 IPR012677 -
Trme30399g00001 298 SUPERFAMILY RNA-binding domain, RBD 205 293 IPR035979 GO:0003676
Trme30399g00001 298 CDD RRM2_I_PABPs 13 88 IPR045305 -
Trme30399g00001 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Trme30399g00001 298 FunFam Polyadenylate-binding protein 97 192 - -
Trme30399g00001 298 FunFam Poly(A) binding protein cytoplasmic 1 like 202 291 - -
Trme30399g00001 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Trme30399g00001 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 IPR000504 GO:0003723
Trme30399g00001 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 279 IPR000504 GO:0003723
Trme30399g00001 298 PANTHER RNA BINDING PROTEIN 14 295 - -
Trme30399g00001 298 FunFam Polyadenylate-binding protein 9 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30399g00001 Trme-Chr30399 1 1148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30399g00001 1 298 Eukaryotic Initiation Factors Gene Family AT1G71770 63.667 4.71e-133 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30399g00001 K13126 - gmx:100783163 474.552