Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30353g00001 GATTCGGTTGAATTTTGGAAACAATTCATTGCATCATCAGTTGAGAAGTCAAACAAAGCTAACAATGGTTATGTTTCACGAAAAGAGTATAAGTCCAATGTGAAGAAAGATGATTCTGAAGACATCGATGAAGCCAAGTCTGAAGAAATGTCTAATGCTGAGCCAGAGTCTTCGAAATCAGTAAAGAAAAATAAATGGAAAGCTGAGGAAGTTAAGAAGCTGATTGATTTACGGAGTGACCTCCGCGACAGATTTAAAGTTGTGAAGGGACGGATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCTGCACAATGCAAATCTCTATGGACATCCTTGGTACTGAAATATGAGGACATCAAGAATGGGAAGGATACCAGAAAAAATTGGCAATATCTTGA 425 0.3976 DSVEFWKQFIASSVEKSNKANNGYVSRKEYKSNVKKDDSEDIDEAKSEEMSNAEPESSKSVKKNKWKAEEVKKLIDLRSDLRDRFKVVKGRMALWEEISQSLLADGISRSPAQCKSLWTSLVLKYEDIKNGKDTRKNWQYL 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30353g00001 141 ProSiteProfiles Myb-like domain profile. 58 122 IPR001005 -
Trme30353g00001 141 Gene3D - 66 126 - -
Trme30353g00001 141 MobiDBLite consensus disorder prediction 29 64 - -
Trme30353g00001 141 CDD GT1 64 129 - -
Trme30353g00001 141 Pfam Myb/SANT-like DNA-binding domain 64 140 IPR044822 -
Trme30353g00001 141 MobiDBLite consensus disorder prediction 25 64 - -
Trme30353g00001 141 PANTHER RIBONUCLEASE J 2 140 - -
Trme30353g00001 141 SMART sant 62 124 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30353g00001 65 125 Trihelix Transcription Factor Family AT2G38250 39.344 4.35e-08 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trme30353g00001 Myb_DNA-bind_4 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30353g00001 - - gmx:100783850 211.846