Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30352g00001 ATGCCTCCTGAGGCGCTTGAGATCACAAGGAAGTTTATGAACAAACCTGTGAGAATTCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATAAAACAATTTTATGTCAATGTTGATAAAGAGGAATGGAAGCTCGACACACTCTGTGATCTTTATGAGACATTGGCAATCACTCAGAGTGTCATTTTTGTCAACACCAGACGGAAGGTTGACTGGCTGACTGACAAGATGAGAAGCCGTGACCACACTGTCTCAGCAACACACGGAGACATGGACCAGAATACTAGAGACATTATTATGCGTGAATTCCGTTCTGGATCTTCCCGTGTTTTAATCACTACTGATCTTCTTGCTCGTGGTATTGATGTCCAGCAAGTGTCTTTAGTTATAAATTATGATCTCCCCACACAGCCTGAAAACTACCTCCATCGTATTGGTCGTAGTGGAAGGTTCGGTAGGAAAGGTGTTGCCATTAACTTTGTCACAACAGATGATGAAAGAATGCTGAGTGACATCCAGAAGTTCTACAATGTGATAATTGAGGAGCTGCCTTCCAATGTTGCCGAACTTCTGTGA 576 0.4323 MPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSDIQKFYNVIIEELPSNVAELL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30352g00001 191 FunFam Eukaryotic initiation factor 4A-III 25 191 - -
Trme30352g00001 191 CDD SF2_C_DEAD 31 161 - -
Trme30352g00001 191 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 175 - -
Trme30352g00001 191 Gene3D - 23 191 IPR027417 -
Trme30352g00001 191 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 30 191 IPR001650 -
Trme30352g00001 191 SMART helicmild6 71 152 IPR001650 -
Trme30352g00001 191 Pfam Helicase conserved C-terminal domain 44 152 IPR001650 -
Trme30352g00001 191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 187 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30352g00001 Trme-Chr30352 492 1067 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30352g00001 1 191 Eukaryotic Initiation Factors Gene Family AT1G72730 94.241 2.43e-135 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30352g00001 K03257 - mnt:21409931 375.17