Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30303g00001 GCTGAAATCAACTATCTCGGGCAATTTCAGCATCGTAATCTCGTCAAATTAATAGGATACTGCTGTGAGGATGAACACCGGCTTCTGGTTTATGAGTTTATGCCCAAGGGAAGCATGGAGAATCATCTTTTTAGACGAGGTTCTTATTTTCAGCCATTCTCTTGGAGTTTGCGAATGAAAATAGCCCTTGGTGCTGCAAAAGGTCTTGCTTTTCTCCATAGTACAGAACCTAAAGTCATATACCGTGACTTCAAAACTTCGAATATACTACTTGATTCTAACTATGATGCCAAACTTTCTGATTTTGGGTTGGCAAGAGATGGACCAACTGGTGATAAAAGTCATGTCTCTACACGGGTCATGGGAACCCGTGGATATGCAGCGCCAGAGTATCTAGCAACAGGTATTAACAGCTCTGGTGTTTGA 426 0.4202 AEINYLGQFQHRNLVKLIGYCCEDEHRLLVYEFMPKGSMENHLFRRGSYFQPFSWSLRMKIALGAAKGLAFLHSTEPKVIYRDFKTSNILLDSNYDAKLSDFGLARDGPTGDKSHVSTRVMGTRGYAAPEYLATGINSSGV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30303g00001 141 Gene3D Transferase(Phosphotransferase) domain 1 1 140 - -
Trme30303g00001 141 SUPERFAMILY Protein kinase-like (PK-like) 2 136 IPR011009 -
Trme30303g00001 141 ProSitePatterns Serine/Threonine protein kinases active-site signature. 79 91 IPR008271 GO:0004672|GO:0006468
Trme30303g00001 141 Pfam Protein kinase domain 2 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme30303g00001 141 PANTHER OS01G0588500 PROTEIN-RELATED 1 135 - -
Trme30303g00001 141 ProSiteProfiles Protein kinase domain profile. 1 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30303g00001 Trme-Chr30303 331 975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30303g00001 2 135 Glycoside Hydrolase AT3G07070 57.037 4.17e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme30303g00001 Pkinase 2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30303g00001 - - gmx:100819620 265.003