Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30292g00001 GCTAGTGGTCCTGGCTTCATGGCACGTGACATCACATTTGAGAACTATGCTGGACCGGAGAAGCACCAAGCGGTGGCGCTCCGTGTTGGAGCAGATCACGCGGTGGTGTATCGCTGCAACATTGTGGGGTACCAAGACGCGTGTTATGTGCATTCCAACCGTCAATTCTTCCGCGAATGCAACATTTATGGCACCGTAGATTTTATATTTGGAAATGCGGCGGTTGTTTTTCAAAAGTGCAACATTTATGCTCGTAAGCCCATGGCCCAACAAAAGAACACCATCACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNATTCATGATTGTCGGATCCTACCTGCCCCAGATCTAGCCTCATCAAAGGGCATCGAAACATATTTAGGTCGTCCGTGGAAAATGTATTCTAGGACCATTTATATGTTGTCCTATATGGGTGGTCACGTGCATCCGCGCGGATGGTTGGAATGGAATGGAGACTTTGCTTTAAATACATTGTATTATGGTGAGTACATGAATTTTGGCCCGGGTGCAGCTATCGGACAAAGGGTCAAATGGCCTGGATACCGAGTCATTACTTCTACTGTGGAGGCCAATAGATACACCGTGTCCCAATTCATCTCCGGTTCGTCGTGGTTACCATCTACAGGAGTGGCATTTTTGGCCGGGTTATCCACTTGA 693 0.4488 ASGPGFMARDITFENYAGPEKHQAVALRVGADHAVVYRCNIVGYQDACYVHSNRQFFRECNIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITXXXXXXXXXXXXXXIHDCRILPAPDLASSKGIETYLGRPWKMYSRTIYMLSYMGGHVHPRGWLEWNGDFALNTLYYGEYMNFGPGAAIGQRVKWPGYRVITSTVEANRYTVSQFISGSSWLPSTGVAFLAGLST 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30292g00001 230 SUPERFAMILY Pectin lyase-like 2 227 IPR011050 -
Trme30292g00001 230 ProSitePatterns Pectinesterase signature 2. 62 71 IPR033131 -
Trme30292g00001 230 PANTHER PECTINESTERASE 2 218 - -
Trme30292g00001 230 Coils Coil 88 96 - -
Trme30292g00001 230 Pfam Pectinesterase 2 213 IPR000070 GO:0030599|GO:0042545
Trme30292g00001 230 Gene3D - 1 228 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30292g00001 Trme-Chr30292 134 826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30292g00001 1 229 Carbohydrate Esterase AT5G53370 73.478 1.32e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30292g00001 - - lang:109330048 412.535