Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30282g00001 GATGTAAAATCTAGTAATATTTTGCTAGATGGAGAATTTGGTGCAAAAATTGCTGATTTTGGAGTTGCTAAATTTGTTAGAGGTGTCAGCAATGGGACAGAAGAACCTATGTCTATGATTGCTGGATCTTGTGGTTACATTGCACCAGAATATGCTTATACTCTTAGGGTGAATGAAAAGAGTGACATTTATAGCTTTGGTGTAGTGATTTTGGAATTGGTAACTGGAAAACACCCTATTGATCAAGAATATGGAGAAAAAGATTTGGTAAAATGGGTTTCTTCCAAATTGAATGAGCAAGGACATGATCAAGTGATTGATCCAATCCTTGATTCTAAGTATAAGGAAGAAATAAGCAAAGTACTCAACTTGGGGATTCTTTGCACAAGCTCATTTCCTATAAACCGTCCTTCAATGAGAAGTGTAGTGAAAATGCTGCAGGAAGTAAAAGCAGTTGCTAAATCCAGAAGTGGAAAATTCTCTCCTTATTATCAAGAAGTAGTCTCTGACAATGATCATTAG 522 0.3582 DVKSSNILLDGEFGAKIADFGVAKFVRGVSNGTEEPMSMIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKHPIDQEYGEKDLVKWVSSKLNEQGHDQVIDPILDSKYKEEISKVLNLGILCTSSFPINRPSMRSVVKMLQEVKAVAKSRSGKFSPYYQEVVSDNDH 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30282g00001 173 Gene3D Transferase(Phosphotransferase) domain 1 1 167 - -
Trme30282g00001 173 Pfam Protein kinase domain 1 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme30282g00001 173 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 151 - -
Trme30282g00001 173 SUPERFAMILY Protein kinase-like (PK-like) 1 147 IPR011009 -
Trme30282g00001 173 ProSiteProfiles Protein kinase domain profile. 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30282g00001 Trme-Chr30282 110 925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30282g00001 1 170 Receptor kinase-like Gene Family AT1G28440 64.045 1.28e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme30282g00001 Pkinase 1.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30282g00001 - - qsa:O6P43_028854 248.054