Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme30234g00001 | ATGTTTACAGCTTATTTCCTGGAGGCATATCGACCAGTGAGGAAAGGTGACTTCTTCCTTGTGAGAGGGGGAATGAGAAGTGTAGAATTCAAGGTTATTGAAACTGACCCACATGAGTACTGTGTAGTGGCCCCAGACACAGAGATCTTCTGTGAAGGAGAGCCCATTAAAAGGGAAGATGAGAATCGTTTAGATGAGGTTGGTTATGATGATGTTGGTGGTGTAAGAAAGCAGATGGCACAGATTAGGGAACTTGTGGAACTGCCCTTGAGGCACCCACAGTTGTTCAAGTCTATTGGTGTCAAGCCACCAAAAGGGATTCTGTTGTATGGACCCCCTGGATCTGGAAAAACTTTAATTGCTAGAGCAGTTGCAAATGAAACAGGTGCCTTCTTTTTCTGCATTAATGGCCCTGAGATAATGTCAAAACTCGCTGGTGAGAGTGAAAGTAATCTAAGAAAGGCATTTGAGGAAGCAGAGAAGAATGC | 488 | 0.4406 | MFTAYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETDPHEYCVVAPDTEIFCEGEPIKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme30234g00001 | 163 | FunFam | Transitional endoplasmic reticulum ATPase | 68 | 163 | - | - | |
| Trme30234g00001 | 163 | Pfam | ATPase family associated with various cellular activities (AAA) | 107 | 163 | IPR003959 | GO:0005524|GO:0016887 | |
| Trme30234g00001 | 163 | SUPERFAMILY | Cdc48 domain 2-like | 4 | 66 | IPR029067 | - | |
| Trme30234g00001 | 163 | PANTHER | AAA-FAMILY ATPASE | 61 | 163 | - | - | |
| Trme30234g00001 | 163 | FunFam | Cell division control 48 | 1 | 71 | - | - | |
| Trme30234g00001 | 163 | Coils | Coil | 149 | 163 | - | - | |
| Trme30234g00001 | 163 | Gene3D | - | 1 | 69 | - | - | |
| Trme30234g00001 | 163 | Pfam | Cell division protein 48 (CDC48), domain 2 | 2 | 57 | IPR004201 | - | |
| Trme30234g00001 | 163 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 61 | 159 | IPR027417 | - | |
| Trme30234g00001 | 163 | Gene3D | - | 70 | 162 | IPR027417 | - | |
| Trme30234g00001 | 163 | SMART | CDC48_2_2 | 1 | 58 | IPR004201 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme30234g00001 | Trme-Chr30234 | 1 | 488 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme30234g00001 | 66 | 163 | Calmodulin-binding Proteins | AT3G56690 | 48.980 | 4.90e-26 | 101 |