Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme301973g00001 CACAAATGCTCTGTTTGCAACAAAGCTTTTTCATCTTATCAAGCACTTGGTGGACACAAAGCCAGTCACCGGAAAAGTGCTGTTATGTCAACTGCTGAAGATCATCAGACTACAACAACCTCATCCGCCGTGACTACCAGCTCTGCTGCGTCCAACGGTAAGATCAAGTCTCATGAGTGTTCCATCTGTCATAAATCCTTTCCTACTGGACAAGCTTTGGGAGGACACAAGCGTTGTCACTATGAAGGTGGTGCCGGTGGTGGAAACAGCACCGTAACTGCATCTGAAGTTGGATCTTCTCACAGTCACCACCGTGATTTTGATCTTAACCTCCCGGCTTTTCC 344 0.4738 HKCSVCNKAFSSYQALGGHKASHRKSAVMSTAEDHQTTTTSSAVTTSSAASNGKIKSHECSICHKSFPTGQALGGHKRCHYEGGAGGGNSTVTASEVGSSHSHHRDFDLNLPAFP 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme301973g00001 115 SMART c2h2final6 58 80 IPR013087 -
Trme301973g00001 115 SMART c2h2final6 1 23 IPR013087 -
Trme301973g00001 115 MobiDBLite consensus disorder prediction 82 115 - -
Trme301973g00001 115 MobiDBLite consensus disorder prediction 17 54 - -
Trme301973g00001 115 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Trme301973g00001 115 ProSitePatterns Zinc finger C2H2 type domain signature. 3 23 IPR013087 -
Trme301973g00001 115 MobiDBLite consensus disorder prediction 31 54 - -
Trme301973g00001 115 SUPERFAMILY beta-beta-alpha zinc fingers 1 80 IPR036236 -
Trme301973g00001 115 ProSiteProfiles Zinc finger C2H2 type domain profile. 1 23 IPR013087 -
Trme301973g00001 115 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 2 112 IPR044653 GO:0003700
Trme301973g00001 115 Gene3D Classic Zinc Finger 1 80 - -
Trme301973g00001 115 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Trme301973g00001 115 Pfam C2H2-type zinc finger 1 25 - -
Trme301973g00001 115 Pfam C2H2-type zinc finger 58 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme301973g00001 Trme-Chr301973 3 346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme301973g00001 1 115 C2H2 Transcription Factor Family AT5G04340 56.557 6.65e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme301973g00001 zf-C2H2_6 8.9e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme301973g00001 - - cave:132189668 154.066