Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30180g00001 TCAGTTTCAGGGTTAAGTTCAAAGGCTGTGAATGTCAGTACAGAAGATATCAGTAGCCCATGTTGTAAGGTTCCTGATGATCTCAGTAGCTCAACTAAGACTGGAGTACCAGCGGAATCGGTATTGGTCCCTCGGACTATTCGTGGCGAGGAGGAGATCTTGCAACCATCCAATTTGAAGTGCTTTACTTCTACAGAACTTAAGGCTGCAACCAGAAATTTTCATGTAGATAGTGTGTTAGGAGATGATGGTATTGGATCAGTTTTTAAGGGTTGGATTGATAAACACTCAACTTCTGCTGCCAAACCTGGCACAGGCATTGTTGTTGCTGTCAAAAGACTTTATCAGGATGGCTTCAAAGGTCACAAGGATTTGTTGGCTGAAGCCAACTATCTAGGCCAGCTTTCACATCCTCACCTAGTGAAATTGATTGGATATTGCCTTGAAGATGAAAACAGCTTTATGGTCTATGAATTTATGCCACGTGGCAGCTTGGAGAATCACTTGTTTATCAGAGGCTCATATTTTCAACCTCTTTCATGGAACCTCCGTTTGAAGGTTGCTCTTGGAGCTGCAAAAGGCCTTGCATTTCTTCACAGTGCTGAAACAAAAGCGACATGCCGCGATTTCAAG 633 0.4313 SVSGLSSKAVNVSTEDISSPCCKVPDDLSSSTKTGVPAESVLVPRTIRGEEEILQPSNLKCFTSTELKAATRNFHVDSVLGDDGIGSVFKGWIDKHSTSAAKPGTGIVVAVKRLYQDGFKGHKDLLAEANYLGQLSHPHLVKLIGYCLEDENSFMVYEFMPRGSLENHLFIRGSYFQPLSWNLRLKVALGAAKGLAFLHSAETKATCRDFK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30180g00001 211 ProSiteProfiles Protein kinase domain profile. 74 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme30180g00001 211 SUPERFAMILY Protein kinase-like (PK-like) 47 210 IPR011009 -
Trme30180g00001 211 Gene3D Transferase(Phosphotransferase) domain 1 160 211 - -
Trme30180g00001 211 SMART tyrkin_6 74 210 IPR020635 GO:0004713|GO:0006468
Trme30180g00001 211 FunFam Serine/threonine-protein kinase BIK1 43 159 - -
Trme30180g00001 211 PANTHER OS01G0588500 PROTEIN-RELATED 34 211 - -
Trme30180g00001 211 Pfam Protein tyrosine and serine/threonine kinase 76 202 IPR001245 GO:0004672|GO:0006468
Trme30180g00001 211 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30180g00001 Trme-Chr30180 1 1173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30180g00001 60 211 Receptor kinase-like Gene Family AT5G56890 44.444 4.79e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme30180g00001 PK_Tyr_Ser-Thr 6.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30180g00001 - - tcc:18590681 268.47