Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30133g00001 ATGGAGCTTGACTTAAATGAGAAGCCCGTGGACCGAATTGAAGAGCAAATGAAACGGCTCGAGGCCATTTTCAAGGCGAAACAAACTCAGAAGCAGCAAAAATGTTATACTTCAATTCAGATAACTAATTTTGCAGGAGAATTGTTAACAAAAGCTGATAATGTTCAAGATGATGAAAGCAAGGTGACCAAGGAAGAAGTTGAAGGAGGGACATTGGAATGCGAGAAAACACGTAAAAGGAAGGCTGCCTGTTTAGTTGCGAAGGCGTTGGGGATGGAAACATCCTCAGACGGCGTTGCAGGCCGCACTAGAAACTTCTTTGATTGTAATATATGTTTGGACACGGCAAATGATGCTGTATTGACTTGCTGTGGTCACTTGTTTTGTTGGGAATGCTTCTATCAGTTGCCATATGCTTATTCAAATGCCAAAGAGTGTCCTGTGTGTGCAGGAGAAGTTGTTGACACCGATGTCATACCAGTATATGGCAACGGAAGGGTCGATGATAGTGGTCAGTTTGAATTGAAAGAATCTGGTTTAAGATTTCCTAGTCGACCGCACGCACCTAGAGTTGAGAGTACTAGGCAGCGTCGCAGAAGACGCACTGTTACTTCTACAAACCATGATTTGTCTTTGTTTGGTAACTTTGGCGGATTGGAAGAGCCTGATCCGTTGCAACTCCCGATTATTTCTAATGATTGA 702 0.4316 MELDLNEKPVDRIEEQMKRLEAIFKAKQTQKQQKCYTSIQITNFAGELLTKADNVQDDESKVTKEEVEGGTLECEKTRKRKAACLVAKALGMETSSDGVAGRTRNFFDCNICLDTANDAVLTCCGHLFCWECFYQLPYAYSNAKECPVCAGEVVDTDVIPVYGNGRVDDSGQFELKESGLRFPSRPHAPRVESTRQRRRRRTVTSTNHDLSLFGNFGGLEEPDPLQLPIISND 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30133g00001 233 MobiDBLite consensus disorder prediction 184 204 - -
Trme30133g00001 233 SUPERFAMILY RING/U-box 101 159 - -
Trme30133g00001 233 SMART ring_2 109 149 IPR001841 -
Trme30133g00001 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 63 201 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trme30133g00001 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 163 IPR013083 -
Trme30133g00001 233 ProSiteProfiles Zinc finger RING-type profile. 109 149 IPR001841 -
Trme30133g00001 233 Pfam Zinc finger, C3HC4 type (RING finger) 108 153 - -
Trme30133g00001 233 Coils Coil 10 30 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30133g00001 100 204 C3H Transcription Factor Family AT3G58030 50.943 2.66e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30133g00001 - - cam:101495597 318.546