Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme30075g00001 ATGCTGGAAGTGCTCGATCAAGAAGCTGCAGCTCTATATTCACTCAGATCACAGGCTCAGAGGCTTGAAGCACTTCATGAATTTAAATCAGGAAAGGTTCCTATATTACTAGCAACTGATGTTGCCGGCCGTGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGGTTCCACAAGATTATATCCATCGTGTAGGCCGTACTGCAAGAGCAGGTAGAGGGGGACTCGCTTTGAGCCTTGTCACGCAGAATGATATTGATCTCATTGGTAAAATAGAGGGCCTTATTGAAAAGAATCTTGAAAAGATTGAATATAAAGAAACTGAGGTGCTTTCTCTGATGAAAAAGGTTTTTAGTGCTAAGAATGTTGCAGAAATGAAGATGATTGATGATGGTTTTGACGAGAAAGCGAAAGAGCGGAAAAAACAGAAACTGAAAATGTTAGCAGAGAAAGGATTATTAAAGGAAACAA 487 0.3963 MLEVLDQEAAALYSLRSQAQRLEALHEFKSGKVPILLATDVAGRGLDIPTVDLVINYDVPRVPQDYIHRVGRTARAGRGGLALSLVTQNDIDLIGKIEGLIEKNLEKIEYKETEVLSLMKKVFSAKNVAEMKMIDDGFDEKAKERKKQKLKMLAEKGLLKET 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme30075g00001 162 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 116 IPR001650 -
Trme30075g00001 162 CDD SF2_C_DEAD 1 86 - -
Trme30075g00001 162 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 3 152 - -
Trme30075g00001 162 Gene3D - 2 161 IPR027417 -
Trme30075g00001 162 SMART helicmild6 1 77 IPR001650 -
Trme30075g00001 162 Pfam Helicase conserved C-terminal domain 8 77 IPR001650 -
Trme30075g00001 162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 115 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme30075g00001 Trme-Chr30075 263 1174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme30075g00001 6 90 Eukaryotic Initiation Factors Gene Family AT3G13920 41.176 1.84e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme30075g00001 K14778 - gmx:100798597 255.758