Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme300745g00001 ATGGAAGCAATGTGTCAAATTCATCACGTCAACGTGGCTCGCTTGGTTGGCTTTTGTGCAGACGGGAACAGACAAGCCTTGGTGTATGAATTTCTACCAAAAGGTTCGTTGCAGAAATTCATATCATCTGCAGACAATAAGGATGCCTTTTTAGGTTGGGAAAGGCTACAACACATTTCTCTCGGTATAGCTAAGGGAATTGAGTATCTTCATCAAG 217 0.424 MEAMCQIHHVNVARLVGFCADGNRQALVYEFLPKGSLQKFISSADNKDAFLGWERLQHISLGIAKGIEYLHQ 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme300745g00001 72 Gene3D Transferase(Phosphotransferase) domain 1 1 72 - -
Trme300745g00001 72 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 72 IPR045874 GO:0004672
Trme300745g00001 72 Pfam Protein tyrosine and serine/threonine kinase 2 72 IPR001245 GO:0004672|GO:0006468
Trme300745g00001 72 ProSiteProfiles Protein kinase domain profile. 1 72 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme300745g00001 72 SUPERFAMILY Protein kinase-like (PK-like) 2 71 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme300745g00001 Trme-Chr300745 90 306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme300745g00001 3 72 Receptor kinase-like Gene Family AT1G66910 48.571 5.96e-20 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme300745g00001 PK_Tyr_Ser-Thr 3.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme300745g00001 - - tpra:123914140 150.984